L - Replication, recombination and repair

Download

Stats

COG definitions	Organims	Proteins	Median Protein Length	Genes
189	1,309	146,012	380.0	169

Organism	Protein	COG	Cat	Annotation
735	1018	COG0122	L	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
1233	1247	COG0164	L	Ribonuclease HII
1230	1458	COG0177	L	Endonuclease III
1216	1870	COG0178	L	Excinuclease UvrABC ATPase subunit
1243	2111	COG0187	L	DNA gyrase/topoisomerase IV, subunit B
1247	2132	COG0188	L	DNA gyrase/topoisomerase IV, subunit A
1227	2976	COG0210	L	Superfamily I DNA or RNA helicase
1019	1349	COG0249	L	DNA mismatch repair ATPase MutS
1284	1578	COG0258	L	5'-3' exonuclease Xni/ExoIX (flap endonuclease)
924	1395	COG0266	L	Formamidopyrimidine-DNA glycosylase
648	1271	COG0270	L	DNA-cytosine methylase
1187	1391	COG0272	L	NAD-dependent DNA ligase
1181	1530	COG0305	L	Replicative DNA helicase
1202	1553	COG0322	L	Excinuclease UvrABC, nuclease subunit
1018	1102	COG0323	L	DNA mismatch repair ATPase MutL
1082	1292	COG0328	L	Ribonuclease HI
478	713	COG0338	L	DNA-adenine methylase
1159	1729	COG0350	L	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)
1128	1126	COG0353	L	Recombinational DNA repair protein RecR
1290	1731	COG0358	L	DNA primase (bacterial type)
1056	2020	COG0389	L	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair
779	1071	COG0415	L	Deoxyribodipyrimidine photolyase
318	419	COG0417	L	DNA polymerase B elongation subunit
856	1249	COG0419	L	DNA repair exonuclease SbcCD ATPase subunit
888	1179	COG0420	L	DNA repair exonuclease SbcCD nuclease subunit
811	1373	COG0433	L	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains
1278	1463	COG0468	L	RecA/RadA recombinase
700	819	COG0470	L	DNA polymerase III, delta prime subunit
885	1002	COG0496	L	Broad specificity polyphosphatase and 5'/3'-nucleotidase SurE
1079	1120	COG0497	L	DNA repair ATPase RecN
877	1445	COG0507	L	ATPase/5Ã¢â‚¬â„¢-3Ã¢â‚¬â„¢ helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)
1170	3707	COG0513	L	Superfamily II DNA and RNA helicase
924	1572	COG0514	L	Superfamily II DNA helicase RecQ
1168	1168	COG0536	L D	GTPase involved in cell partioning and DNA repair
1276	1859	COG0550	L	DNA topoisomerase IA
658	933	COG0551	L	DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains
856	1713	COG0553	K L	Superfamily II DNA or RNA helicase, SNF2 family
1204	1220	COG0556	L	Excinuclease UvrABC helicase subunit UvrB
445	976	COG0582	L X	Integrase/recombinase, includes phage integrase
1174	1827	COG0587	L	DNA polymerase III, alpha subunit
1297	1474	COG0592	L	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog
1151	1733	COG0593	L	Chromosomal replication initiation ATPase DnaA
1093	1249	COG0608	L	ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation
1176	2146	COG0629	L	Single-stranded DNA-binding protein
1151	1148	COG0632	L	Holliday junction resolvasome RuvABC DNA-binding subunit
595	653	COG0648	L	Endonuclease IV
740	759	COG0692	L	Uracil-DNA glycosylase
8	9	COG0699	L	Replication fork clamp-binding protein CrfC (dynamin-like GTPase family)
1063	1683	COG0708	L	Exonuclease III
1131	1323	COG0749	L	DNA polymerase I, 3'-5' exonuclease and polymerase domains
1114	1264	COG0758	L	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake
1143	3043	COG0776	L	Bacterial nucleoid DNA-binding protein IHF-alpha
1033	1043	COG0792	L	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family
1129	1175	COG0816	J K L	YqgF/RuvX protein, pre-16S rRNA maturation RNase/Holliday junction resolvase/anti-termination factor
1055	1086	COG0817	L	Holliday junction resolvasome RuvABC endonuclease subunit RuvC
115	126	COG0827	L	Adenine-specific DNA N6-methylase
951	1998	COG0847	L	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease
646	1285	COG0863	L	DNA modification methylase
108	110	COG1039	L	Ribonuclease HIII
862	925	COG1058	L	ADP-ribose pyrophosphatase domain of DNA damage- and competence-inducible protein CinA
60	60	COG1059	L V	Thermostable 8-oxoguanine DNA glycosylase
821	1608	COG1061	K L	Superfamily II DNA or RNA helicase
1075	1103	COG1066	L	DNA repair protein RadA/Sms, contains AAA+ ATPase domain
1017	1185	COG1074	L	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)
72	103	COG1107	L	Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain
64	84	COG1110	L	Reverse gyrase
136	136	COG1111	L	ERCC4-related helicase
557	840	COG1112	L	Superfamily I DNA and/or RNA helicase
529	617	COG1193	L	dsDNA-specific endonuclease/ATPase MutS2
1009	1034	COG1194	L	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs
965	1005	COG1195	L	Recombinational DNA repair ATPase RecF
1115	1135	COG1197	K L	Transcription-repair coupling factor (superfamily II helicase)
1139	1150	COG1198	L	Primosomal protein N' (replication factor Y) - superfamily II helicase
864	1189	COG1199	L	Rad3-related DNA helicase DinG
1083	1110	COG1200	L	RecG-like helicase
562	754	COG1201	L	Lhr-like helicase
68	107	COG1202	L	Superfamily II helicase, archaea-specific
270	338	COG1204	L	Replicative superfamily II helicase
452	598	COG1205	L	ATP-dependent helicase YprA, contains C-terminal metal-binding DUF1998 domain
120	164	COG1241	L	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family
319	407	COG1273	L	Non-homologous end joining protein Ku, dsDNA break repair
96	96	COG1311	L	Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B
787	803	COG1322	L	DNA anti-recombination protein (rearrangement mutator) RmuC
304	309	COG1330	L	Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V)
946	953	COG1354	L	Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family
177	330	COG1372	L X	Intein/homing endonuclease
1093	1093	COG1381	L	Recombinational DNA repair protein RecO (RecF pathway)
126	128	COG1389	L	DNA topoisomerase VI, subunit B
71	71	COG1423	L	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family
1150	1168	COG1466	L	DNA polymerase III, delta subunit
119	124	COG1467	L	Eukaryotic-type DNA primase, catalytic (small) subunit
197	593	COG1474	L	Cdc6-related protein, AAA superfamily ATPase
575	1496	COG1484	L	DNA replication protein DnaC
364	375	COG1515	L	Deoxyinosine 3'-endonuclease (endonuclease V)
598	1003	COG1525	L	Endonuclease YncB, thermonuclease family
627	815	COG1533	L	DNA repair photolyase
881	1051	COG1555	L	DNA uptake protein ComE or related DNA-binding protein
1035	1053	COG1570	L	Exonuclease VII, large subunit
905	1545	COG1573	L	Uracil-DNA glycosylase
93	101	COG1591	L	Holliday junction resolvase Hjc, archaeal type
116	239	COG1599	L	ssDNA-binding replication factor A, large subunit
117	132	COG1602	L	Archaeal DNA repair protein NreA
39	40	COG1630	L	ssDNA and dsDNA 5'-3' nuclease NurA, repair of double-stranded DNA breaks
265	309	COG1637	L	Endonuclease NucS, RecB family
136	139	COG1697	L	DNA topoisomerase VI, subunit A
85	87	COG1711	L	DNA replication initiation complex subunit, GINS family
984	986	COG1722	L	Exonuclease VII small subunit
173	223	COG1743	L	Adenine-specific DNA methylase, contains a Zn-ribbon domain
627	1117	COG1793	L	ATP-dependent DNA ligase
324	352	COG1796	L	DNA polymerase/3'-5' exonuclease PolX
84	84	COG1860	L F	Predicted metal-binding protein, contains two cysteine clusters, UPF0179 family
95	95	COG1933	L	Archaeal DNA polymerase II, large subunit
133	149	COG1948	L	ERCC4-type crossover junction endonuclease
797	2599	COG1961	L	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE
917	1281	COG2003	L	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif
426	429	COG2094	L	3-methyladenine DNA glycosylase Mpg
611	836	COG2135	L	ssDNA abasic site-binding protein YedK/HMCES, SRAP family
493	606	COG2169	L	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains
545	763	COG2176	L	DNA polymerase III, alpha subunit (gram-positive type)
363	486	COG2189	L	Adenine specific DNA methylase Mod
117	122	COG2219	L	Eukaryotic-type DNA primase, large subunit
173	173	COG2231	L	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily
1142	1161	COG2255	L	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB
1105	1163	COG2256	L	Replication-associated recombination protein RarA (DNA-dependent ATPase)
345	346	COG2354	L	Membrane protein MutK/YedI, may be involved in DNA repair
231	309	COG2356	L	Endonuclease I
90	109	COG2406	L	Ferritin-like DNA-binding protein, DPS (DNA Protection under Starvation) family
1186	1795	COG2812	L	DNA polymerase III, gamma/tau subunits
699	810	COG2818	L	3-methyladenine DNA glycosylase Tag
623	1007	COG2827	L	Predicted endonuclease, GIY-YIG superfamily
495	563	COG2840	L	DNA-nicking endonuclease, Smr domain
403	719	COG2852	L	Very-short-patch-repair endonuclease
479	668	COG2887	L	RecB family exonuclease
253	257	COG2925	L	Exonuclease I (degrades ssDNA)
460	460	COG2927	L	DNA polymerase III, chi subunit
44	61	COG2946	L	DNA relaxase NicK
193	191	COG2965	L	Primosomal replication protein N
267	299	COG2974	L	DNA recombination-dependent growth factor RdgC
546	550	COG3022	L	DNA-binding protein YaaA associated with the oxidative stress response
436	437	COG3024	L	Endogenous inhibitor of DNA gyrase, YacG/DUF329 family
85	85	COG3050	L	DNA polymerase III, psi subunit
96	97	COG3057	L	Negative regulator of replication initiation SeqA
126	126	COG3066	L	DNA mismatch repair protein MutH
136	144	COG3081	L	dsDNA-binding nucleoid-associated protein YejK/NdpA
74	75	COG3120	L	Macrodomain Ter protein organizer, MatP/YcbG family
89	91	COG3141	L	dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP
455	526	COG3145	L	Alkylated DNA repair dioxygenase AlkB
304	331	COG3214	L	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks
330	554	COG3285	L	Eukaryotic-type DNA primase
89	89	COG3298	L	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
72	124	COG3390	L	Replication protein A (RPA) family protein
93	103	COG3392	L	Adenine-specific DNA methylase
233	301	COG3449	L	DNA gyrase inhibitor GyrI/SbmC
241	246	COG3569	L	DNA topoisomerase IB
476	650	COG3593	L	Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
183	238	COG3598	L	RecA-family ATPase
85	86	COG3611	L	Replication initiation and membrane attachment protein DnaB
402	415	COG3663	L	G:T/U-mismatch repair DNA glycosylase
76	87	COG3723	L	Recombinational DNA repair protein RecT
303	345	COG3727	L	G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein
213	384	COG3743	L	Predicted 5' DNA nuclease, flap endonuclease-1-like, helix-3-turn-helix (H3TH) domain
8	10	COG3780	L	DNA endonuclease related to intein-encoded endonucleases
385	398	COG3857	L	ATP-dependent helicase/DNAse subunit B
182	200	COG3886	L	HKD family nuclease
311	313	COG3893	L	Inactivated superfamily I helicase
75	75	COG3923	L	Primosomal replication protein N''
172	256	COG3935	L	DNA replication protein DnaD
90	97	COG3972	L	Superfamily I DNA and RNA helicases
256	421	COG3973	L	DNA helicase IV
35	35	COG4047	L	N-glycosylase/DNA lyase (8-oxoguanine DNA glycosylase)
90	91	COG4098	L	Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)
71	71	COG4199	L	ssDNA-specific exonuclease RecJ
207	383	COG4227	L	Antirestriction protein ArdC
103	109	COG4294	L	UV DNA damage repair endonuclease
177	189	COG4335	L	3-methylpurine DNA glycosylase AlkC
94	98	COG4389	L	Site-specific recombinase
95	97	COG4467	L	Regulator of replication initiation timing YabA
145	181	COG4570	L	Holliday junction resolvase RusA (prophage-encoded endonuclease)
383	542	COG4581	L	Superfamily II RNA helicase
105	132	COG4646	L	Adenine-specific DNA methylase, N12 class
33	41	COG4712	L	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family
52	76	COG4817	L	DNA-binding ferritin-like protein (Dps family)
357	438	COG4912	L	3-methyladenine DNA glycosylase AlkD
459	618	COG4973	L	Site-specific recombinase XerC
1246	7290	COG4974	L	Site-specific recombinase XerD
17	17	COG4998	L	Predicted endonuclease, RecB family
5	5	COG5055	L	Recombinational DNA repair protein (RAD52 pathway)
146	673	COG5464	L	Recombination-promoting DNA endonuclease RpnC/YadD
28	35	COG5851	L D	Stage 0 sporulation inhibitor Sda, checkpoint for initiation of sporulation and replication