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Status |
Public on May 03, 2024 |
Title |
plasma, T1D, S49 |
Sample type |
SRA |
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Source name |
plasma
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Organism |
Homo sapiens |
Characteristics |
tissue: plasma
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Extracted molecule |
total RNA |
Extraction protocol |
Total RNA extraction was performed from 200 µL of plasma through Serum/Plasma Norgen kit (cat. 55000, Thorold, ON L2V 4Y6, Canada) Small RNA-derived cDNA libraries were prepared using QiaSeq miRNA library kit (cat. 331505, Qiagen)
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Library strategy |
ncRNA-Seq |
Library source |
transcriptomic |
Library selection |
size fractionation |
Instrument model |
Illumina NovaSeq 6000 |
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Description |
CHRT2_Sample_49
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Data processing |
Data were analysed using QIAGEN GeneGlobe Data Analysis Center portal. Resulting reads were mapped referring to miRbase v21 and piRNABank using QIAGEN Gene Globe data analysis center software Assembly: GRCh38/hg38 Supplementary files format and content: semicolon separated value file includes raw counts for each Sample
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Submission date |
Apr 26, 2024 |
Last update date |
May 03, 2024 |
Contact name |
Francesco Dotta |
E-mail(s) |
francesco.dotta@unisi.it
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Organization name |
University of Siena
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Department |
Department of Medicine, surgery and neuroscience
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Street address |
Viale Bracci 16
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City |
Siena |
State/province |
Si |
ZIP/Postal code |
53100 |
Country |
Italy |
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Platform ID |
GPL24676 |
Series (1) |
GSE265981 |
A set of circulating microRNAs belonging to the 14q32 chromosomic locus identifies two different subgroups of individuals with recent onset Stage 3 type 1 diabetes [second cohort, untargeted] |
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Relations |
BioSample |
SAMN41095918 |
SRA |
SRX24379816 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
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