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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 03, 2024 |
| Title |
Plasma,T1D,S77 |
| Sample type |
SRA |
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| Source name |
plasma
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| Organism |
Homo sapiens |
| Characteristics |
tissue: plasma
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA extraction-free approach, and exploit quantitative nuclease protection assay (qNPA) chemistry
Concentration has been evaluated through HTG EdgeSeq KAPA Library quantification, and each library has been normalized and pooled using HTG EdgeSeq RUO library calculator
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| Library strategy |
ncRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina NextSeq 500 |
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| Description |
CHRT1_Sample_77
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| Data processing |
Reads were aligned referring to miRbase v20 using HTG Parser software
Assembly: GRCh38/hg38
Supplementary files format and content: semicolon separated value file includes raw counts for each Sample
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| Submission date |
Apr 26, 2024 |
| Last update date |
May 03, 2024 |
| Contact name |
Francesco Dotta |
| E-mail(s) |
francesco.dotta@unisi.it
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| Organization name |
University of Siena
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| Department |
Department of Medicine, surgery and neuroscience
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| Street address |
Viale Bracci 16
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| City |
Siena |
| State/province |
Si |
| ZIP/Postal code |
53100 |
| Country |
Italy |
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| Platform ID |
GPL18573 |
| Series (1) |
| GSE265976 |
A set of circulating microRNAs belonging to the 14q32 chromosomic locus identifies two different subgroups of individuals with recent onset Stage 3 type 1 diabetes [first cohort, targeted] |
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| Relations |
| BioSample |
SAMN41095238 |
| SRA |
SRX24379435 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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