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Sample GSM3480 Query DataSets for GSM3480
Status Public on Apr 21, 2003
Title HDMTX-DX-16
Sample type RNA
 
Source name Primary Acute Lymphoblastic Leukemia Cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:351, Count:32
Corner- Avg:36252, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:10.785266,SFGene:All
Background:Avg:323.88,Stdev:5.02,Max:340.4,Min:313.2
Noise:Avg:7.64,Stdev:0.27,Max:8.6,Min:7.0
RawQ:11.43
Keywords = ALL
 
Submission date Jan 03, 2003
Last update date Mar 16, 2009
Contact name William E Evans
E-mail(s) william.evans@stjude.org
Phone 901-495-4995
Fax 901-495-6869
URL http://www.stjude.org/leukemia/bio_evans.htm
Organization name St.Jude Children's Research Hospital
Department Pharmaceutical Sciences
Lab Evans
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL8300
Series (2)
GSE224 HDMTX-16 pair
GSE412 Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells

Data table header descriptions
ID_REF As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
Detection_p_value

Data table
ID_REF VALUE Detection_p_value
1000_at 1174.4 0.048995
1001_at 151.3 0.581931
1002_f_at 40.8 0.956032
1003_s_at 74.4 0.660442
1004_at 72.7 0.810313
1005_at 33.9 0.882840
1006_at 18.3 0.910595
1007_s_at 1079.8 0.007543
1008_f_at 959.4 0.014937
1009_at 7603.7 0.000266
100_g_at 129.9 0.749276
1010_at 21.9 0.892699
1011_s_at 1782.5 0.000468
1012_at 24.0 0.910595
1013_at 80.7 0.872355
1014_at 1947.4 0.000388
1015_s_at 40.8 0.996415
1016_s_at 80.8 0.933135
1017_at 27.0 0.990015
1018_at 86.2 0.660442

Total number of rows: 12625

Table truncated, full table size 296 Kbytes.




Supplementary data files not provided

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