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Status
Public on Apr 21, 2003
Title
HDMTX-DX-19
Sample type
RNA
Source name
Primary Acute Lymphoblastic Leukemia Cells
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Sample Type: human total RNA Sample User: jmorris Description: ALL-pre patient study Comments: Experiment User: jmorris Algorithm: Statistical Corner+ Avg:230, Count:32 Corner- Avg:36316, Count:32 BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:11.636765,SFGene:All Background:Avg:431.67,Stdev:5.20,Max:442.8,Min:417.0 Noise:Avg:10.82,Stdev:0.32,Max:11.7,Min:9.9 RawQ:14.42 Keywords = ALL
Submission date
Jan 03, 2003
Last update date
Mar 16, 2009
Contact name
William E Evans
E-mail(s)
william.evans@stjude.org
Phone
901-495-4995
Fax
901-495-6869
URL
http://www.stjude.org/leukemia/bio_evans.htm
Organization name
St.Jude Children's Research Hospital
Department
Pharmaceutical Sciences
Lab
Evans
Street address
332 N. Lauderdale St.
City
Memphis
State/province
TN
ZIP/Postal code
38105
Country
USA
Platform ID
GPL8300
Series (2)
GSE227
HDMTX-19 pair
GSE412
Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells
Data table header descriptions
ID_REF
As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE
This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
Detection_p_value
Data table
ID_REF
VALUE
Detection_p_value
1000_at
304.4
0.561639
1001_at
356.3
0.234557
1002_f_at
79.5
0.939581
1003_s_at
398.5
0.418069
1004_at
456.4
0.320830
1005_at
5451.4
0.000322
1006_at
182.2
0.458816
1007_s_at
905.5
0.014937
1008_f_at
3353.0
0.000673
1009_at
2698.5
0.000219
100_g_at
59.2
0.882840
1010_at
146.4
0.697453
1011_s_at
344.7
0.204022
1012_at
273.1
0.339558
1013_at
52.1
0.918663
1014_at
1065.6
0.204022
1015_s_at
80.4
0.990015
1016_s_at
186.5
0.810313
1017_at
195.9
0.602006
1018_at
49.5
0.837065
Total number of rows: 12625 Table truncated, full table size 297 Kbytes .Supplementary data files not provided