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Sample GSM3477 Query DataSets for GSM3477
Status Public on Apr 21, 2003
Title HDMTX-DX-19
Sample type RNA
 
Source name Primary Acute Lymphoblastic Leukemia Cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:230, Count:32
Corner- Avg:36316, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:11.636765,SFGene:All
Background:Avg:431.67,Stdev:5.20,Max:442.8,Min:417.0
Noise:Avg:10.82,Stdev:0.32,Max:11.7,Min:9.9
RawQ:14.42
Keywords = ALL
 
Submission date Jan 03, 2003
Last update date Mar 16, 2009
Contact name William E Evans
E-mail(s) william.evans@stjude.org
Phone 901-495-4995
Fax 901-495-6869
URL http://www.stjude.org/leukemia/bio_evans.htm
Organization name St.Jude Children's Research Hospital
Department Pharmaceutical Sciences
Lab Evans
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL8300
Series (2)
GSE227 HDMTX-19 pair
GSE412 Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells

Data table header descriptions
ID_REF As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
Detection_p_value

Data table
ID_REF VALUE Detection_p_value
1000_at 304.4 0.561639
1001_at 356.3 0.234557
1002_f_at 79.5 0.939581
1003_s_at 398.5 0.418069
1004_at 456.4 0.320830
1005_at 5451.4 0.000322
1006_at 182.2 0.458816
1007_s_at 905.5 0.014937
1008_f_at 3353.0 0.000673
1009_at 2698.5 0.000219
100_g_at 59.2 0.882840
1010_at 146.4 0.697453
1011_s_at 344.7 0.204022
1012_at 273.1 0.339558
1013_at 52.1 0.918663
1014_at 1065.6 0.204022
1015_s_at 80.4 0.990015
1016_s_at 186.5 0.810313
1017_at 195.9 0.602006
1018_at 49.5 0.837065

Total number of rows: 12625

Table truncated, full table size 297 Kbytes.




Supplementary data files not provided

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