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Sample GSM3445 Query DataSets for GSM3445
Status Public on Apr 21, 2003
Title HDMTX-5
Sample type RNA
 
Source name Primary Acute Lymphoblastic Leukemia Cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:275, Count:32
Corner- Avg:41417, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.686159,SFGene:All
Background:Avg:328.66,Stdev:5.68,Max:345.4,Min:318.5
Noise:Avg:7.07,Stdev:0.19,Max:7.7,Min:6.6
RawQ:10.88
Keywords = ALL
 
Submission date Jan 02, 2003
Last update date Mar 16, 2009
Contact name William E Evans
E-mail(s) william.evans@stjude.org
Phone 901-495-4995
Fax 901-495-6869
URL http://www.stjude.org/leukemia/bio_evans.htm
Organization name St.Jude Children's Research Hospital
Department Pharmaceutical Sciences
Lab Evans
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL8300
Series (3)
GSE234 HDMTX-5 pair
GSE268 HDMTX
GSE412 Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells

Data table header descriptions
ID_REF As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
Detection_p_value

Data table
ID_REF VALUE Detection_p_value
1000_at 790.9 0.024711
1001_at 86.0 0.541184
1002_f_at 73.5 0.892699
1003_s_at 144.6 0.479380
1004_at 141.6 0.679170
1005_at 4471.6 0.000219
1006_at 71.2 0.581931
1007_s_at 1952.1 0.000388
1008_f_at 1956.4 0.000562
1009_at 3757.8 0.000266
100_g_at 382.1 0.162935
1010_at 108.4 0.561639
1011_s_at 1203.3 0.000266
1012_at 157.3 0.162935
1013_at 84.8 0.320830
1014_at 1332.3 0.001354
1015_s_at 149.3 0.641310
1016_s_at 30.0 0.882840
1017_at 228.0 0.019304
1018_at 63.3 0.679170

Total number of rows: 12625

Table truncated, full table size 296 Kbytes.




Supplementary data files not provided

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