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Status
Public on Apr 21, 2003
Title
HDMTX-5
Sample type
RNA
Source name
Primary Acute Lymphoblastic Leukemia Cells
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Sample User: jmorris Description: ALL-post patient study Comments: Experiment User: jmorris Algorithm: Statistical Corner+ Avg:275, Count:32 Corner- Avg:41417, Count:32 BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.686159,SFGene:All Background:Avg:328.66,Stdev:5.68,Max:345.4,Min:318.5 Noise:Avg:7.07,Stdev:0.19,Max:7.7,Min:6.6 RawQ:10.88 Keywords = ALL
Submission date
Jan 02, 2003
Last update date
Mar 16, 2009
Contact name
William E Evans
E-mail(s)
william.evans@stjude.org
Phone
901-495-4995
Fax
901-495-6869
URL
http://www.stjude.org/leukemia/bio_evans.htm
Organization name
St.Jude Children's Research Hospital
Department
Pharmaceutical Sciences
Lab
Evans
Street address
332 N. Lauderdale St.
City
Memphis
State/province
TN
ZIP/Postal code
38105
Country
USA
Platform ID
GPL8300
Series (3)
GSE234
HDMTX-5 pair
GSE268
HDMTX
GSE412
Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells
Data table header descriptions
ID_REF
As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE
This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
Detection_p_value
Data table
ID_REF
VALUE
Detection_p_value
1000_at
790.9
0.024711
1001_at
86.0
0.541184
1002_f_at
73.5
0.892699
1003_s_at
144.6
0.479380
1004_at
141.6
0.679170
1005_at
4471.6
0.000219
1006_at
71.2
0.581931
1007_s_at
1952.1
0.000388
1008_f_at
1956.4
0.000562
1009_at
3757.8
0.000266
100_g_at
382.1
0.162935
1010_at
108.4
0.561639
1011_s_at
1203.3
0.000266
1012_at
157.3
0.162935
1013_at
84.8
0.320830
1014_at
1332.3
0.001354
1015_s_at
149.3
0.641310
1016_s_at
30.0
0.882840
1017_at
228.0
0.019304
1018_at
63.3
0.679170
Total number of rows: 12625 Table truncated, full table size 296 Kbytes .Supplementary data files not provided