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Sample GSM3398 Query DataSets for GSM3398
Status Public on Apr 21, 2003
Title HDMTX-21
Sample type RNA
 
Source name Primary Acute Lymphoblastic Leukemia Cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description Sample User: jmorris
Description: ALL-post patient study
Comments:
Experiment User: jmorris
Algorithm: Statistical
Corner+ Avg:393, Count:32
Corner- Avg:35118, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.876832,SFGene:All
Background:Avg:539.48,Stdev:6.19,Max:562.3,Min:520.1
Noise:Avg:10.84,Stdev:0.32,Max:11.7,Min:9.6
RawQ:14.98
Keywords = ALL
 
Submission date Jan 02, 2003
Last update date Mar 16, 2009
Contact name William E Evans
E-mail(s) william.evans@stjude.org
Phone 901-495-4995
Fax 901-495-6869
URL http://www.stjude.org/leukemia/bio_evans.htm
Organization name St.Jude Children's Research Hospital
Department Pharmaceutical Sciences
Lab Evans
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL8300
Series (3)
GSE230 HDMTX-21 pair
GSE268 HDMTX
GSE412 Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells

Data table header descriptions
ID_REF As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
Detection_p_value

Data table
ID_REF VALUE Detection_p_value
1000_at 909.9 0.017001
1001_at 17.2 0.641310
1002_f_at 40.9 0.749276
1003_s_at 170.0 0.621816
1004_at 216.4 0.302547
1005_at 1269.0 0.000266
1006_at 48.5 0.765443
1007_s_at 476.3 0.014937
1008_f_at 2263.7 0.000805
1009_at 5826.2 0.000388
100_g_at 583.7 0.150527
1010_at 118.5 0.458816
1011_s_at 317.4 0.005643
1012_at 259.1 0.066865
1013_at 45.5 0.837065
1014_at 1330.7 0.004863
1015_s_at 108.5 0.901946
1016_s_at 16.9 0.983000
1017_at 68.8 0.882840
1018_at 153.3 0.541184

Total number of rows: 12625

Table truncated, full table size 296 Kbytes.




Supplementary data files not provided

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