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Status
Public on Apr 21, 2003
Title
HDMTX-21
Sample type
RNA
Source name
Primary Acute Lymphoblastic Leukemia Cells
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Sample User: jmorris Description: ALL-post patient study Comments: Experiment User: jmorris Algorithm: Statistical Corner+ Avg:393, Count:32 Corner- Avg:35118, Count:32 BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:4.876832,SFGene:All Background:Avg:539.48,Stdev:6.19,Max:562.3,Min:520.1 Noise:Avg:10.84,Stdev:0.32,Max:11.7,Min:9.6 RawQ:14.98 Keywords = ALL
Submission date
Jan 02, 2003
Last update date
Mar 16, 2009
Contact name
William E Evans
E-mail(s)
william.evans@stjude.org
Phone
901-495-4995
Fax
901-495-6869
URL
http://www.stjude.org/leukemia/bio_evans.htm
Organization name
St.Jude Children's Research Hospital
Department
Pharmaceutical Sciences
Lab
Evans
Street address
332 N. Lauderdale St.
City
Memphis
State/province
TN
ZIP/Postal code
38105
Country
USA
Platform ID
GPL8300
Series (3)
GSE230
HDMTX-21 pair
GSE268
HDMTX
GSE412
Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells
Data table header descriptions
ID_REF
As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE
This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
Detection_p_value
Data table
ID_REF
VALUE
Detection_p_value
1000_at
909.9
0.017001
1001_at
17.2
0.641310
1002_f_at
40.9
0.749276
1003_s_at
170.0
0.621816
1004_at
216.4
0.302547
1005_at
1269.0
0.000266
1006_at
48.5
0.765443
1007_s_at
476.3
0.014937
1008_f_at
2263.7
0.000805
1009_at
5826.2
0.000388
100_g_at
583.7
0.150527
1010_at
118.5
0.458816
1011_s_at
317.4
0.005643
1012_at
259.1
0.066865
1013_at
45.5
0.837065
1014_at
1330.7
0.004863
1015_s_at
108.5
0.901946
1016_s_at
16.9
0.983000
1017_at
68.8
0.882840
1018_at
153.3
0.541184
Total number of rows: 12625 Table truncated, full table size 296 Kbytes .Supplementary data files not provided