GEO help: Mouse over screen elements for information.
Status
Public on Apr 21, 2003
Title
HDMTX-3
Sample type
RNA
Source name
Primary Acute Lymphoblastic Leukemia Cells
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Sample User: jmorris Description: ALL-post patient study Comments: Experiment User: jmorris Algorithm: Statistical Corner+ Avg:273, Count:32 Corner- Avg:37090, Count:32 BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:5.683659,SFGene:All Background:Avg:409.43,Stdev:11.84,Max:460.3,Min:388.3 Noise:Avg:8.85,Stdev:0.62,Max:11.7,Min:7.9 RawQ:12.28 Keywords = ALL
Submission date
Jan 02, 2003
Last update date
Mar 16, 2009
Contact name
William E Evans
E-mail(s)
william.evans@stjude.org
Phone
901-495-4995
Fax
901-495-6869
URL
http://www.stjude.org/leukemia/bio_evans.htm
Organization name
St.Jude Children's Research Hospital
Department
Pharmaceutical Sciences
Lab
Evans
Street address
332 N. Lauderdale St.
City
Memphis
State/province
TN
ZIP/Postal code
38105
Country
USA
Platform ID
GPL8300
Series (3)
GSE232
HDMTX-3 pair
GSE268
HDMTX
GSE412
Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells
Data table header descriptions
ID_REF
As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE
This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
Detection_p_value
Data table
ID_REF
VALUE
Detection_p_value
1000_at
745.5
0.027860
1001_at
108.8
0.378184
1002_f_at
142.7
0.561639
1003_s_at
64.9
0.749276
1004_at
510.8
0.043968
1005_at
406.3
0.048995
1006_at
12.5
0.939581
1007_s_at
721.1
0.006532
1008_f_at
1509.5
0.001354
1009_at
5942.7
0.000266
100_g_at
578.3
0.234557
1010_at
50.2
0.732537
1011_s_at
537.0
0.001354
1012_at
317.5
0.024711
1013_at
34.3
0.765443
1014_at
1599.4
0.001141
1015_s_at
89.0
0.901946
1016_s_at
10.1
0.992457
1017_at
163.8
0.339558
1018_at
237.0
0.267463
Total number of rows: 12625 Table truncated, full table size 296 Kbytes .Supplementary data files not provided