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BLAST is a Registered Trademark of the National Library of Medicine
Bookshelf ID: NBK279696
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BLAST® Command Line Applications User Manual [Internet]. Bethesda (MD): National Center for Biotechnology Information (US); 2008-.
- Get NCBI BLAST databases
- Create a masked BLAST database
- Search with database masking enabled
- Display BLAST search results with custom output format
- Use blastdb_aliastool to manage the BLAST databases
- Reformat BLAST reports with blast_formatter
- Extracting data from BLAST databases with blastdbcmd
- Use Windowmasker to filter the query sequence(s) in a BLAST search
- Building a BLAST database with your (local) sequences
- Limiting a Search by taxonomy
- Limiting a Search with a List of Identifiers
- Multiple databases vs. spaces in filenames and paths
- Specifying a sequence as the multiple sequence alignment master in psiblast
- Ignoring the consensus sequence in the multiple sequence alignment in psiblast
- Performing a DELTA-BLAST search
- Query a BLAST database with an accession, but exclude that accession from the results
- Faster sequence lookups by accession
- Threading By Query
- Clean-up unused database volumes
- Cookbook - BLAST® Command Line Applications User ManualCookbook - BLAST® Command Line Applications User Manual
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