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| Status |
Public on May 03, 2024 |
| Title |
Plasma,T1D,S98 |
| Sample type |
SRA |
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| Source name |
plasma
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| Organism |
Homo sapiens |
| Characteristics |
tissue: plasma
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| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA extraction was performed from 200 µL of plasma through Serum/Plasma Norgen kit (cat. 55000, Thorold, ON L2V 4Y6, Canada)
Small RNA-derived cDNA libraries were prepared using QiaSeq miRNA library kit (cat. 331505, Qiagen)
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| Library strategy |
ncRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina NovaSeq 6000 |
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| Description |
CHRT1_Sample_98
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| Data processing |
Data were analysed using QIAGEN GeneGlobe Data Analysis Center portal. Resulting reads were mapped referring to miRbase v21 and piRNABank using QIAGEN Gene Globe data analysis center software
Assembly: GRCh38/hg38
Supplementary files format and content: semicolon separated value file includes raw counts for each Sample
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| Submission date |
Apr 26, 2024 |
| Last update date |
May 03, 2024 |
| Contact name |
Francesco Dotta |
| E-mail(s) |
francesco.dotta@unisi.it
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| Organization name |
University of Siena
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| Department |
Department of Medicine, surgery and neuroscience
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| Street address |
Viale Bracci 16
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| City |
Siena |
| State/province |
Si |
| ZIP/Postal code |
53100 |
| Country |
Italy |
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| Platform ID |
GPL24676 |
| Series (1) |
| GSE265980 |
A set of circulating microRNAs belonging to the 14q32 chromosomic locus identifies two different subgroups of individuals with recent onset Stage 3 type 1 diabetes [first cohort, untargeted] |
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| Relations |
| BioSample |
SAMN41095671 |
| SRA |
SRX24379651 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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