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Sample GSM8111226

Query DataSets for GSM8111226

Status

Public on Feb 27, 2024

Title

Histone ChIP-seq from BLaER1 (ENCLB986ZYO)

Sample type

SRA

Source name

Homo sapiens BLaER1 cell line

Organism

Homo sapiens

Characteristics

antibody: H4K20me1
line: BLaER1
biomaterial_type: cell line
biosample encode accession: ENCBS137KWE (SAMN40088244)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS137KWE
Sex: female
dev stage: unknown
age: unknown
donor_id: ENCDO305PTK
lab: Roderic Guigo, CRG
source: Thomas Graf
link: ENCBS137KWE at ENCODE; https://www.encodeproject.org/ENCBS137KWE/

Extracted molecule

genomic DNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/74685878-ae42-4070-955a-b3faabf64d44/@@download/attachment/growth_and_transdifferentiation.pdf, general protocol: https://www.encodeproject.org/documents/a60eb23e-58cd-4b29-a925-cf0c3d7d2e42/@@download/attachment/chromatin_immunoprecipitation.pdf, pipeline protocol: https://www.encodeproject.org/documents/cbec7655-48a2-4166-af75-d71b44e00f46/@@download/attachment/ChIP-seq_data_processing.pdf

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR839YFS/
***************
biological replicate number: 1
technical replicate number: 1
description: H4K20me1 ChIP-Seq on untreated BLaER1 cell line.
experiment encode accession: ENCSR839YFS
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR455AFK
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB986ZYO
fragmentation methods: shearing (Covaris generic)

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Feb 26, 2024

Last update date

Mar 13, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE259168

Histone ChIP-seq from BLaER1 (ENCSR839YFS)

Relations

BioSample

SAMN40088244

Named Annotation

GSM8111226_ENCFF385YXA_fold_change_over_control_GRCh38.bigWig

Named Annotation

GSM8111226_ENCFF905KQB_signal_p-value_GRCh38.bigWig

Named Annotation

GSM8111226_ENCFF271HGO_signal_p-value_GRCh38.bigWig

Named Annotation

GSM8111226_ENCFF382FMR_fold_change_over_control_GRCh38.bigWig

Supplementary file	Size	Download	File type/resource
GSM8111226_ENCFF271HGO_signal_p-value_GRCh38.bigWig	1.4 Gb	(ftp)(http)	BIGWIG
GSM8111226_ENCFF382FMR_fold_change_over_control_GRCh38.bigWig	1.6 Gb	(ftp)(http)	BIGWIG
GSM8111226_ENCFF385YXA_fold_change_over_control_GRCh38.bigWig	1.1 Gb	(ftp)(http)	BIGWIG
GSM8111226_ENCFF592TUK_peaks_GRCh38.bigBed	4.2 Mb	(ftp)(http)	BIGBED
GSM8111226_ENCFF600TUX_pseudoreplicated_peaks_GRCh38.bed.gz	1.2 Mb	(ftp)(http)	BED
GSM8111226_ENCFF877MCY_peaks_GRCh38.bed.gz	2.6 Mb	(ftp)(http)	BED
GSM8111226_ENCFF905KQB_signal_p-value_GRCh38.bigWig	1.3 Gb	(ftp)(http)	BIGWIG
GSM8111226_ENCFF954YHN_pseudoreplicated_peaks_GRCh38.bigBed	2.1 Mb	(ftp)(http)	BIGBED
GSM8111226_ENCLB986ZYO_README.txt.gz	1.4 Kb	(ftp)(http)	TXT
Raw data are available in SRA