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Sample GSM8110672 Query DataSets for GSM8110672
Status Public on Feb 27, 2024
Title Histone ChIP-seq from BLaER1 (ENCLB760YJU)
Sample type SRA
 
Source name Homo sapiens BLaER1 cell line 6 hours after the sample was treated with 100 nM 17beta-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
Organism Homo sapiens
Characteristics antibody: H3K4me3
line: BLaER1
biomaterial_type: cell line
biosample encode accession: ENCBS411JBC (SAMN40088259)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS411JBC
Sex: female
dev stage: unknown
age: unknown
donor_id: ENCDO305PTK
lab: Roderic Guigo, CRG
source: Thomas Graf
treatments: treatment_term_id: CHEBI:16469; treatment_term_name: 17beta-estradiol; treatment_type: chemical; treatment_term_id: UniProtKB:P08700; treatment_term_name: Interleukin-3; treatment_type: protein; treatment_term_id: UniProtKB:P09603; treatment_term_name: CSF1; treatment_type: protein;
link: ENCBS411JBC at ENCODE; https://www.encodeproject.org/ENCBS411JBC/
Extracted molecule genomic DNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/74685878-ae42-4070-955a-b3faabf64d44/@@download/attachment/growth_and_transdifferentiation.pdf, general protocol: https://www.encodeproject.org/documents/a60eb23e-58cd-4b29-a925-cf0c3d7d2e42/@@download/attachment/chromatin_immunoprecipitation.pdf, pipeline protocol: https://www.encodeproject.org/documents/cbec7655-48a2-4166-af75-d71b44e00f46/@@download/attachment/ChIP-seq_data_processing.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR808DPZ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-Seq on BLaER1 cell line after 6 h treatment with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1.
experiment encode accession: ENCSR808DPZ
assay title: Histone ChIP-seq
assembly: GRCh38
possible controls: ENCSR566AUD
encode release date: 2022-05-10
lab: Roderic Guigo, CRG
library encode accession: ENCLB760YJU
fragmentation methods: shearing (Covaris generic)
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Feb 25, 2024
Last update date Mar 13, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE258896 Histone ChIP-seq from BLaER1 (ENCSR808DPZ)
Relations
BioSample SAMN40088259
Named Annotation GSM8110672_ENCFF033UIA_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM8110672_ENCFF160KZZ_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM8110672_ENCFF114OCF_signal_p-value_GRCh38.bigWig
Named Annotation GSM8110672_ENCFF711DQY_signal_p-value_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM8110672_ENCFF033UIA_fold_change_over_control_GRCh38.bigWig 940.8 Mb (ftp)(http) BIGWIG
GSM8110672_ENCFF114OCF_signal_p-value_GRCh38.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM8110672_ENCFF160KZZ_fold_change_over_control_GRCh38.bigWig 1.2 Gb (ftp)(http) BIGWIG
GSM8110672_ENCFF168TFJ_pseudoreplicated_peaks_GRCh38.bed.gz 838.2 Kb (ftp)(http) BED
GSM8110672_ENCFF189NSQ_peaks_GRCh38.bed.gz 1.3 Mb (ftp)(http) BED
GSM8110672_ENCFF251FQF_peaks_GRCh38.bigBed 2.8 Mb (ftp)(http) BIGBED
GSM8110672_ENCFF255JNB_pseudoreplicated_peaks_GRCh38.bigBed 1.9 Mb (ftp)(http) BIGBED
GSM8110672_ENCFF711DQY_signal_p-value_GRCh38.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM8110672_ENCLB760YJU_README.txt.gz 1.4 Kb (ftp)(http) TXT
Raw data are available in SRA

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