|
| Status |
Public on May 03, 2024 |
| Title |
miR379-410 cKO animal 3 |
| Sample type |
SRA |
| |
|
| Source name |
Hippocampus (bulk tissue)
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Hippocampus (bulk tissue)
genotype: miR379-410 knockout
Sex: Male
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Trizol-chloroform RNA extraction
NEB Next® Ultra RNA Library Prep Kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
RNAseq quantification was performed using salmon 1.3.0 with the --seqBias option on the GENCODE M20 transcriptome
Assembly: GRCm38
Supplementary files format and content: The `readcount_matrix.tab` provides the read count in each sample and gene.
|
| |
|
| Submission date |
Nov 09, 2023 |
| Last update date |
May 03, 2024 |
| Contact name |
Gerhard Schratt |
| E-mail(s) |
gerhard.schratt@hest.ethz.ch
|
| Organization name |
ETH Zürich
|
| Department |
D-HEST
|
| Lab |
Systems Neuroscience
|
| Street address |
Winterthurerstrasse 190
|
| City |
Zürich |
| ZIP/Postal code |
8057 Zürich |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE247439 |
miRNA-mediated inhibition of an actomyosin network in hippocampal pyramidal neurons restricts sociability in adult male mice |
|
| Relations |
| BioSample |
SAMN38194737 |
| SRA |
SRX22478458 |
