|
| Status |
Public on Dec 04, 2022 |
| Title |
long read RNA-seq from psoas muscle (ENCLB199XDS) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens female adult (61 years) psoas muscle tissue, preserved by flash-freezing
|
| Organism |
Homo sapiens |
| Characteristics |
tissue_type: psoas muscle
biomaterial_type: tissue
biosample encode accession: ENCBS326LXR (SAMN19193179)
Sex: female
dev stage: adult
age: 61 year
donor_id: ENCDO186XRB
lab: Michael Snyder, Stanford
source: Yiing Lin, MD, PhD
health state: DM: no; HTN: no; CAD: no; lungs with moderate emphysema
link: ENCBS326LXR at ENCODE; https://www.encodeproject.org/ENCBS326LXR/
link: Derived from ENCODE donor ENCDO186XRB; https://www.encodeproject.org/ENCDO186XRB/
|
| Extracted molecule |
total RNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/77db752f-abf7-4c93-a460-510464134f52/@@download/attachment/ENCODE_protocol_2020pacbio_Final.pdf, general protocol: https://www.encodeproject.org/documents/81af563b-5134-4f78-9bc4-41cb42cc6a48/@@download/attachment/ENCODE%20Long%20Read%20RNA-Seq%20Analysis%20Pipeline%20v3%20%28Human%29.pdf
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Sequel II |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR243DYK/
***************
biological replicate number: 1
technical replicate number: 1
description: W80 psoas muscle ENC4_86
experiment encode accession: ENCSR243DYK
assay title: long read RNA-seq
assembly: GRCh38
encode release date: 2021-06-10
lab: Ali Mortazavi, UCI
library encode accession: ENCLB199XDS
spikeins used: SIRV reference spike-ins used for ENCODE long read RNA-seq pipeline, Ambion mix 1 spike-ins
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Dec 03, 2022 |
| Last update date |
Dec 06, 2022 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL28352 |
| Series (1) |
| GSE219621 |
long read RNA-seq from psoas muscle (ENCSR243DYK) |
|
| Relations |
| BioSample |
SAMN19193179 |
| SRA |
SRX18485784 |
