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Sample GSM640446 Query DataSets for GSM640446
Status Public on Jan 19, 2012
Title CH01615_control_phenotype0_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description tissue: blood,gender:male,race:white
White male peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software. The supplementary data includes both raw and normalized data, which can be loaded using Bioconductor lumi package.
 
Submission date Dec 15, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) northwesternhuang@gmail.com
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 6.69279092832449 105.932713 5.542862 0.2285714 26
ILMN_2055271 6.85365073848095 118.1996758 7.096837 0.02987013 18
ILMN_1736007 6.64625043620057 102.4415539 6.712591 0.3727273 20
ILMN_2383229 6.73795367180057 109.2360119 6.968524 0.1181818 22
ILMN_1806310 6.64262729783797 102.1786306 4.463158 0.3584416 19
ILMN_1779670 6.58780056311772 98.14997932 3.797597 0.5805195 27
ILMN_1653355 6.55383117262765 95.69367794 5.656798 0.5636364 21
ILMN_1717783 6.62297026600424 100.730818 3.608779 0.438961 15
ILMN_1705025 6.64555843378665 102.3872974 4.240321 0.3727273 27
ILMN_1814316 6.63511883989697 101.6167268 4.101325 0.3558442 23
ILMN_2359168 6.5790755777659 97.51456944 3.55353 0.6012987 33
ILMN_1731507 6.51675224945366 93.01815536 4.441977 0.812987 17
ILMN_1787689 6.54914820663182 95.36725218 4.952032 0.6636364 20
ILMN_3241953 7.09539689302912 140.9489008 5.994885 0.001298701 25
ILMN_1745607 6.65545065413171 103.123802 4.341065 0.2922078 33
ILMN_2136495 6.43234671121536 87.35243137 2.962187 0.9714286 14
ILMN_1668111 6.56490221664837 96.48396532 5.188495 0.612987 20
ILMN_2295559 6.56382593538498 96.41323464 5.097551 0.5636364 12
ILMN_1735045 6.7269508378071 108.4372362 7.050261 0.1350649 21
ILMN_1680754 6.71195223043402 107.3769522 5.123552 0.1207792 16

Total number of rows: 47231

Table truncated, full table size 2839 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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