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Sample GSM640441 Query DataSets for GSM640441
Status Public on Jan 19, 2012
Title CH21596_case_phenotype1_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description tissue: blood,gender:male,race:white
White male peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software. The supplementary data includes both raw and normalized data, which can be loaded using Bioconductor lumi package.
 
Submission date Dec 15, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) northwesternhuang@gmail.com
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 6.5930249647393 100.8571197 3.106218 0.5428572 34
ILMN_2055271 6.81036328939297 120.2532303 8.06079 0.02987013 17
ILMN_1736007 6.4377202189297 89.4162424 2.479807 0.9571428 21
ILMN_2383229 6.59354707961258 100.9082715 4.257425 0.4662338 27
ILMN_1806310 6.61915468020184 102.9539677 4.673903 0.4597403 22
ILMN_1779670 6.41434703741496 87.90906219 2.202716 0.974026 24
ILMN_1653355 6.69845084539307 109.7496035 6.193559 0.1636364 24
ILMN_1717783 6.64183387048548 104.8995941 4.410226 0.387013 26
ILMN_1705025 6.65791138954379 106.2338826 5.886118 0.3623376 20
ILMN_1814316 6.52917243428051 95.99582904 3.5224 0.7376623 23
ILMN_2359168 6.52302005487787 95.51326086 3.926531 0.774026 26
ILMN_1731507 6.51415533870523 94.86828625 5.485032 0.7987013 19
ILMN_1787689 6.57090275769299 99.18880122 4.778588 0.5675325 17
ILMN_3241953 7.326095386785 185.5342715 7.497937 0 25
ILMN_1745607 6.60755242359776 102.0539215 4.350685 0.4688312 26
ILMN_2136495 6.40100655328584 87.07228554 3.547911 0.9883117 9
ILMN_1668111 6.69193839928026 109.1994042 5.711643 0.2272727 27
ILMN_2295559 6.55991280779715 98.34806136 3.669898 0.5753247 13
ILMN_1735045 6.48483450713528 92.73693889 2.818439 0.8441558 21
ILMN_1680754 6.67347150769465 107.5501077 5.999473 0.1727273 18

Total number of rows: 47231

Table truncated, full table size 2832 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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