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Sample GSM640440 Query DataSets for GSM640440
Status Public on Jan 19, 2012
Title CH05234_case_phenotype1_race1
Sample type RNA
 
Source name peripheral blood cells
Organism Homo sapiens
Characteristics disease state: no atherosclerosis
ethnicity: non-Hispanic white
tissue: blood
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description tissue: blood,gender:male,race:white
White male peripheral blood samples for atherosclerosis study
Data processing The data was log transformed and then quantile normalized based on the output of Illumina BeadStudio software. The supplementary data includes both raw and normalized data, which can be loaded using Bioconductor lumi package.
 
Submission date Dec 15, 2010
Last update date Jan 19, 2012
Contact name Chiang-Ching Huang
E-mail(s) northwesternhuang@gmail.com
Organization name Northwestern University
Street address 680 N. Lake Shore Dr., Suite 1400
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platform ID GPL10558
Series (1)
GSE20129 Atherosclerosis study using female peripheral blood samples

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 6.54144838137362 94.36260385 5.370028 0.7623377 21
ILMN_2055271 6.76567359244909 110.5892584 6.408467 0.1064935 22
ILMN_1736007 6.64765155333706 101.9657802 5.861334 0.4155844 24
ILMN_2383229 6.66921583180247 103.5651379 6.838448 0.261039 26
ILMN_1806310 6.61555237367885 99.65590686 4.864446 0.4935065 18
ILMN_1779670 6.49162072821484 90.87238476 4.753319 0.8935065 15
ILMN_1653355 6.72753582843486 107.7705462 6.468503 0.1701299 16
ILMN_1717783 6.49666576677834 91.24466573 5.016642 0.8753247 24
ILMN_1705025 6.59585853036688 98.28182462 5.345465 0.5649351 22
ILMN_1814316 6.57866142234202 97.03022676 4.494041 0.6077922 27
ILMN_2359168 6.67980923570363 104.2827727 4.846335 0.3103896 20
ILMN_1731507 6.62353456824535 100.2479525 6.039916 0.4857143 17
ILMN_1787689 6.58922851116805 97.81160123 2.8577 0.5545455 30
ILMN_3241953 7.27050961350149 153.7185277 5.862061 0 23
ILMN_1745607 6.57937951524037 97.08553965 3.948643 0.5792208 26
ILMN_2136495 6.34413547912045 80.91724737 2.80856 0.9987013 17
ILMN_1668111 6.64666788788806 101.9024209 5.270714 0.3831169 20
ILMN_2295559 6.61374836385313 99.53744868 8.212575 0.438961 9
ILMN_1735045 6.59039611667039 97.92260992 6.372004 0.5415584 23
ILMN_1680754 6.92757419649462 122.8120084 10.58271 0.01038961 16

Total number of rows: 47231

Table truncated, full table size 2841 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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