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Sample GSM63692

Query DataSets for GSM63692

Status

Public on Dec 21, 2005

Title

NG001_c

Sample type

RNA

Source name

nodose ganglion

Organism

Characteristics

BALB/c

Treatment protocol

normal standard housing conditions

Extracted molecule

total RNA

Extraction protocol

approximately 150 Laser Capture Microdissected neurons were put in RLT buffer.

Label

biotin

Label protocol

Approximately 12 microgram of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Laser captured visceral sensory neurons.

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Jul 11, 2005

Last update date

Dec 21, 2005

Contact name

Pieter Johan Peeters

E-mail(s)

ppeeter3@prdbe.jnj.com

Organization name

J&J Pharmaceutical R&D

Department

Internal Medicine

Street address

Turnhoutseweg 30

City

Beerse

ZIP/Postal code

2340

Country

Belgium

Platform ID

Series (1)

Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-MUR_b2_at	306.0350193	P	0.001852
AFFX-MURINE_b1_at	526.2681454	P	0.000652
AFFX-MURINE_B2_at	6788.5805425	P	0.000030
AFFX-b-ActinMur/M12481_5_at	81.8847604	M	0.046482
AFFX-b-ActinMur/M12481_M_at	827.6241675	P	0.000044
AFFX-b-ActinMur/M12481_3_at	4577.4264045	P	0.000044
AFFX-GapdhMur/M32599_5_at	59.2262916	P	0.003595
AFFX-GapdhMur/M32599_M_at	776.6407042	P	0.000070
AFFX-GapdhMur/M32599_3_at	5145.7272279	P	0.000044
AFFX-TransRecMur/X57349_5_at	2.5955204	A	0.617401
AFFX-TransRecMur/X57349_M_at	27.8678219	A	0.216524
AFFX-TransRecMur/X57349_3_at	17.1019553	P	0.033677
AFFX-PyruCarbMur/L09192_5_at	78.1495853	M	0.050229
AFFX-PyruCarbMur/L09192_MA_at	53.9905573	M	0.042962
AFFX-PyruCarbMur/L09192_MB_at	7.7664514	A	0.883887
AFFX-PyruCarbMur/L09192_3_at	465.0041853	P	0.000095
AFFX-18SRNAMur/X00686_5_at	771.2920891	P	0.000044
AFFX-18SRNAMur/X00686_M_at	1871.0924602	P	0.000044
AFFX-18SRNAMur/X00686_3_at	556.1004476	P	0.000081
AFFX-DapX-5_at	15.4811233	M	0.050229

Total number of rows: 45101

Table truncated, full table size 1477 Kbytes.

Supplementary data files not provided

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