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Sample GSM63684

Query DataSets for GSM63684

Status

Public on Dec 21, 2005

Title

NG010_c

Sample type

RNA

Source name

nodose ganglion

Organism

Characteristics

BALB/c

Treatment protocol

normal standard housing conditions

Extracted molecule

total RNA

Extraction protocol

approximately 150 Laser Capture Microdissected neurons were put in RLT buffer.

Label

biotin

Label protocol

Approximately 12 microgram of total RNA was processed to produce biotinylated cRNA targets.

Hybridization protocol

standard Affymetrix procedures

Scan protocol

standard Affymetrix procedures

Description

Laser captured visceral sensory neurons.

Data processing

Affymetrix Microarray Suite version 5.0

Submission date

Jul 11, 2005

Last update date

Dec 21, 2005

Contact name

Pieter Johan Peeters

E-mail(s)

ppeeter3@prdbe.jnj.com

Organization name

J&J Pharmaceutical R&D

Department

Internal Medicine

Street address

Turnhoutseweg 30

City

Beerse

ZIP/Postal code

2340

Country

Belgium

Platform ID

Series (1)

Profiling of visceral sensory neurons in dorsal root and nodose ganglia in BALB/c mice.

Data table header descriptions
ID_REF
VALUE	MAS5-calculated Signal intensity
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-MUR_b2_at	275.5322091	P	0.001480
AFFX-MURINE_b1_at	394.0505046	P	0.000451
AFFX-MURINE_B2_at	6202.9848012	P	0.000030
AFFX-b-ActinMur/M12481_5_at	63.3270427	M	0.058444
AFFX-b-ActinMur/M12481_M_at	587.8453832	P	0.000044
AFFX-b-ActinMur/M12481_3_at	4251.9112306	P	0.000044
AFFX-GapdhMur/M32599_5_at	26.5140113	M	0.058444
AFFX-GapdhMur/M32599_M_at	224.5939727	P	0.000147
AFFX-GapdhMur/M32599_3_at	3318.7760665	P	0.000044
AFFX-TransRecMur/X57349_5_at	11.7040122	A	0.300606
AFFX-TransRecMur/X57349_M_at	3.9572283	A	0.617401
AFFX-TransRecMur/X57349_3_at	22.3690255	A	0.062929
AFFX-PyruCarbMur/L09192_5_at	43.4546112	A	0.131361
AFFX-PyruCarbMur/L09192_MA_at	52.7391190	P	0.030976
AFFX-PyruCarbMur/L09192_MB_at	4.0928030	A	0.932322
AFFX-PyruCarbMur/L09192_3_at	187.0070273	P	0.000857
AFFX-18SRNAMur/X00686_5_at	519.3996490	P	0.000044
AFFX-18SRNAMur/X00686_M_at	717.2554537	P	0.000044
AFFX-18SRNAMur/X00686_3_at	417.0513651	P	0.000110
AFFX-DapX-5_at	5.8055087	A	0.275129

Total number of rows: 45101

Table truncated, full table size 1473 Kbytes.

Supplementary data files not provided

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