NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM46953 Query DataSets for GSM46953
Status Public on Mar 31, 2005
Title Breast - 31865
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.55
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Number of years of use? (Oral contraceptives): None
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: None
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 387.8 P 0.000754
AFFX-BioB-M_at 505.8 P 0.000195
AFFX-BioB-3_at 262.4 P 0.006871
AFFX-BioC-5_at 1004.5 P 5.2e-005
AFFX-BioC-3_at 1216.7 P 5.2e-005
AFFX-BioDn-5_at 2541 P 4.4e-005
AFFX-BioDn-3_at 4704.3 P 6e-005
AFFX-CreX-5_at 11908.8 P 4.4e-005
AFFX-CreX-3_at 16039.1 P 4.4e-005
AFFX-DapX-5_at 164.5 P 0.000509
AFFX-DapX-M_at 656.3 P 0.000857
AFFX-DapX-3_at 1422.6 P 9.5e-005
AFFX-LysX-5_at 73.6 A 0.165861
AFFX-LysX-M_at 169 A 0.067678
AFFX-LysX-3_at 230.5 P 0.000258
AFFX-PheX-5_at 111.6 P 0.006867
AFFX-PheX-M_at 97.1 A 0.083592
AFFX-PheX-3_at 225.3 A 0.0727
AFFX-ThrX-5_at 105 A 0.108959
AFFX-ThrX-M_at 159.4 P 0.00762

Total number of rows: 54675

Table truncated, full table size 1446 Kbytes.




Supplementary file Size Download File type/resource
GSM46953.CEL.gz 8.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap