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Sample GSM46901 Query DataSets for GSM46901
Status Public on Mar 31, 2005
Title Rectosigmoid Colon - 23946
Sample type RNA
 
Source name Rectosigmoid Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.51
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 15
Presenting Symptoms: Bright red stools
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Primary Site: Rectosigmoid
Histology: Adenocarcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 532.7 P 0.000754
AFFX-BioB-M_at 610.3 P 8.1e-005
AFFX-BioB-3_at 306.9 P 0.000297
AFFX-BioC-5_at 1153.8 P 5.2e-005
AFFX-BioC-3_at 1473.1 P 4.4e-005
AFFX-BioDn-5_at 3481.1 P 4.4e-005
AFFX-BioDn-3_at 7115.1 P 5.2e-005
AFFX-CreX-5_at 13663.7 P 5.2e-005
AFFX-CreX-3_at 18768.1 P 4.4e-005
AFFX-DapX-5_at 19.9 A 0.382599
AFFX-DapX-M_at 44.2 A 0.440641
AFFX-DapX-3_at 65.2 P 0.021893
AFFX-LysX-5_at 5.7 A 0.760937
AFFX-LysX-M_at 23.2 A 0.749223
AFFX-LysX-3_at 43.9 A 0.067678
AFFX-PheX-5_at 1.6 A 0.824693
AFFX-PheX-M_at 15.9 A 0.772364
AFFX-PheX-3_at 54.8 A 0.455413
AFFX-ThrX-5_at 6 A 0.953575
AFFX-ThrX-M_at 12.3 A 0.617401

Total number of rows: 54675

Table truncated, full table size 1440 Kbytes.




Supplementary file Size Download File type/resource
GSM46901.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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