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Sample GSM46855 Query DataSets for GSM46855
Status Public on Mar 31, 2005
Title Breast - 22223
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 7
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 11-15
Pathological T: 3
Pathological N: 2a
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 3
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 724.6 P 0.000581
AFFX-BioB-M_at 1032.3 P 4.4e-005
AFFX-BioB-3_at 583.6 P 4.4e-005
AFFX-BioC-5_at 2138.6 P 4.4e-005
AFFX-BioC-3_at 2918.5 P 4.4e-005
AFFX-BioDn-5_at 5652.4 P 4.4e-005
AFFX-BioDn-3_at 9845.6 P 4.4e-005
AFFX-CreX-5_at 23460.4 P 5.2e-005
AFFX-CreX-3_at 28406.3 P 4.4e-005
AFFX-DapX-5_at 723.9 P 5.2e-005
AFFX-DapX-M_at 1961.2 P 0.000509
AFFX-DapX-3_at 2738.5 P 5.2e-005
AFFX-LysX-5_at 138.4 P 0.000509
AFFX-LysX-M_at 244.9 P 0.003595
AFFX-LysX-3_at 462.6 P 8.1e-005
AFFX-PheX-5_at 145.8 P 7e-005
AFFX-PheX-M_at 252.3 P 0.000147
AFFX-PheX-3_at 350.9 P 0.000258
AFFX-ThrX-5_at 226.9 P 0.000147
AFFX-ThrX-M_at 312.1 P 5.2e-005

Total number of rows: 54675

Table truncated, full table size 1444 Kbytes.




Supplementary file Size Download File type/resource
GSM46855.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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