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Sample GSM46827 Query DataSets for GSM46827
Status Public on Mar 31, 2005
Title Breast - 1307
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 27
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Pathological Multiple Tumors: Yes
Pathological ER: Negative
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal and Lobular carcinoma
 
Submission date Mar 31, 2005
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1206.3 P 0.000225
AFFX-BioB-M_at 2025.8 P 0.000044
AFFX-BioB-3_at 998 P 0.00007
AFFX-BioC-5_at 3208.5 P 0.000044
AFFX-BioC-3_at 3468.2 P 0.000044
AFFX-BioDn-5_at 9048.7 P 0.000044
AFFX-BioDn-3_at 13739.8 P 0.000044
AFFX-CreX-5_at 40363.8 P 0.000052
AFFX-CreX-3_at 42840.2 P 0.000044
AFFX-DapX-5_at 6.3 A 0.760937
AFFX-DapX-M_at 48.8 A 0.51489
AFFX-DapX-3_at 100 A 0.067678
AFFX-LysX-5_at 43.5 A 0.368438
AFFX-LysX-M_at 29.8 A 0.749204
AFFX-LysX-3_at 71.6 P 0.042962
AFFX-PheX-5_at 7.7 A 0.949771
AFFX-PheX-M_at 32.7 A 0.659339
AFFX-PheX-3_at 141.7 A 0.382589
AFFX-ThrX-5_at 7.2 A 0.883887
AFFX-ThrX-M_at 24.8 A 0.760937

Total number of rows: 54675

Table truncated, full table size 1448 Kbytes.




Supplementary file Size Download File type/resource
GSM46827.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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