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GEO accession:
Sample GSM46819
Query DataSets for GSM46819
Status
Public on Mar 31, 2005
Title
Rectum - 1043
Sample type
RNA
Source name
Rectum
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.2
Patient Age: 20-30
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 109
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 4
Pathological N: 0
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Pathological Stage During or Following Multimodality Therapy: Yes
Primary Site: Rectum
Histology: Adenocarcinoma
Submission date
Mar 31, 2005
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
638.9
P
0.000225
AFFX-BioB-M_at
789.4
P
4.4e-005
AFFX-BioB-3_at
406
P
0.000258
AFFX-BioC-5_at
1243.4
P
4.4e-005
AFFX-BioC-3_at
1737.9
P
5.2e-005
AFFX-BioDn-5_at
4343
P
4.4e-005
AFFX-BioDn-3_at
8248.7
P
5.2e-005
AFFX-CreX-5_at
17318
P
4.4e-005
AFFX-CreX-3_at
22102.2
P
4.4e-005
AFFX-DapX-5_at
41.5
A
0.239063
AFFX-DapX-M_at
44.2
A
0.51489
AFFX-DapX-3_at
77.7
P
0.026111
AFFX-LysX-5_at
36.4
A
0.195246
AFFX-LysX-M_at
33.8
A
0.544587
AFFX-LysX-3_at
9.6
A
0.699394
AFFX-PheX-5_at
22.7
A
0.699394
AFFX-PheX-M_at
3.3
A
0.957093
AFFX-PheX-3_at
35.4
A
0.425962
AFFX-ThrX-5_at
2.6
A
0.963443
AFFX-ThrX-M_at
18.5
A
0.659339
Total number of rows:
54675
Table truncated, full table size
1441 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM46819.CEL.gz
8.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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