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Sample GSM40580 Query DataSets for GSM40580
Status Public on Feb 03, 2005
Title HEL Mhi-2
Sample type RNA
 
Source name Interleukin-7 expanded murine bone marrow cells
Organism Mus musculus
Extracted molecule total RNA
 
Description Interleukin-7 expanded bone marrow cells from anti-HEL immunoglobulin transgenic mice were sorted by FACS for surface IgM high, IgDneg-low expression. The U74Av1 probe arrays were subjected to U74A mask corrections, and all target hybridization intensities were scaled to 1500 arbitrary units using Microarray Suite 5.0 (Affymetrix). (Tze etal. Public Library of Science Biology, In Press 2005)
Raw data obtained from Affymetrix Suite 5.0 program with all arrays subjected to MG-U74A mask corrections and scaling to taget intensity of '1500'. Listed are all probe sets excluding masked probe sets and Affymetrix hybridization control probe sets.
Keywords = bone marrow B cells
 
Submission date Feb 01, 2005
Last update date May 27, 2005
Contact name Lina Tze
E-mail(s) Lina.Tze@anu.edu.au
Phone 011-61-2-6125-2031
Organization name John Curtin School of Medical Research
Street address
City Canberra
State/province ACT
ZIP/Postal code 2601
Country Australia
 
Platform ID GPL32
Series (1)
GSE2227 The role of basal immunoglobulin signaling in immature B cell development

Data table header descriptions
ID_REF ID of column
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
100001_at 36.9 A 0.861235
100002_at 218.8 A 0.52062
100003_at 480 P 0.021866
100004_at 1279.9 P 0.000266
100005_at 2106.3 P 0.000322
100006_at 22.3 A 0.541184
100007_at 2631 P 0.000673
100009_r_at 15.7 A 0.849473
100010_at 1886.2 P 0.000219
100011_at 3393.7 P 0.000266
100012_at 26173.7 P 0.000219
100013_at 1824.4 P 0.000959
100014_at 581.2 P 0.000959
100015_at 213.4 A 0.218983
100016_at 559.7 P 0.003585
100017_at 510.1 A 0.11716
100018_at 415.5 A 0.5
100019_at 65.3 A 0.978134
100020_at 1919 P 0.003067
100021_at 27.3 A 0.837065

Total number of rows: 9977

Table truncated, full table size 258 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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