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Sample GSM38101 Query DataSets for GSM38101
Status Public on Jan 15, 2005
Title Stomach - 8252
Sample type RNA
 
Source name Stomach
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Female
Ethnic Background: Asian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 3
Clinical Question: Grade
Clinical Value: Low
Clinical Question: Stage
Clinical Value: No AJCC scheme for this site and histology
Primary Site: Stomach
Clinical Question: Histology
Clinical Value: Gastrointestinal stromal tumor
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1615.8 P 0.000225
AFFX-BioB-M_at 2298 P 0.000052
AFFX-BioB-3_at 970.2 P 0.00011
AFFX-BioC-5_at 3494.7 P 0.000052
AFFX-BioC-3_at 4575.1 P 0.000044
AFFX-BioDn-5_at 9716.1 P 0.000297
AFFX-BioDn-3_at 17049.9 P 0.000044
AFFX-CreX-5_at 45557.8 P 0.000052
AFFX-CreX-3_at 48564 P 0.000044
AFFX-DapX-5_at 674.5 P 0.000081
AFFX-DapX-M_at 1249 P 0.001102
AFFX-DapX-3_at 1603.9 P 0.00011
AFFX-LysX-5_at 109 A 0.095648
AFFX-LysX-M_at 166.5 A 0.156732
AFFX-LysX-3_at 242.1 P 0.000754
AFFX-PheX-5_at 139.4 P 0.001248
AFFX-PheX-M_at 165.6 P 0.026111
AFFX-PheX-3_at 146.9 M 0.062913
AFFX-ThrX-5_at 246 P 0.004484
AFFX-ThrX-M_at 332.1 P 0.001102

Total number of rows: 54675

Table truncated, full table size 1450 Kbytes.




Supplementary file Size Download File type/resource
GSM38101.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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