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GEO accession:
Sample GSM38098
Query DataSets for GSM38098
Status
Public on Jan 15, 2005
Title
Colon - 8246
Sample type
RNA
Source name
Rectosigmoid Junction
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 56-60
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 7
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Black tarry stools
Presenting Symptoms: Bright red stools
Presenting Symptoms: Diarrhea
Presenting Symptoms: Nausea
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Mucinous Carcinoma
Submission date
Dec 23, 2004
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
ecurley@intgen.org
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
726.4
P
0.000509
AFFX-BioB-M_at
760.7
P
0.000044
AFFX-BioB-3_at
515.1
P
0.000081
AFFX-BioC-5_at
1735.3
P
0.000052
AFFX-BioC-3_at
2046.2
P
0.000044
AFFX-BioDn-5_at
3789.1
P
0.000044
AFFX-BioDn-3_at
7686.2
P
0.00006
AFFX-CreX-5_at
19933.7
P
0.000044
AFFX-CreX-3_at
25287.2
P
0.000044
AFFX-DapX-5_at
1126.9
P
0.00006
AFFX-DapX-M_at
2198
P
0.000509
AFFX-DapX-3_at
2434.1
P
0.000052
AFFX-LysX-5_at
120.5
P
0.00007
AFFX-LysX-M_at
282.3
P
0.012547
AFFX-LysX-3_at
472.3
P
0.00011
AFFX-PheX-5_at
209.2
P
0.00007
AFFX-PheX-M_at
298.7
P
0.000297
AFFX-PheX-3_at
399.7
P
0.00039
AFFX-ThrX-5_at
334.4
P
0.000095
AFFX-ThrX-M_at
543.7
P
0.000044
Total number of rows:
54675
Table truncated, full table size
1444 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM38098.CEL.gz
8.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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