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Sample GSM38083 Query DataSets for GSM38083
Status Public on Jan 15, 2005
Title Breast - 8214
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 37
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Oophorectomy?: No
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Pathological T: 1c
Pathological N: 0(i-)
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 901.5 P 0.000446
AFFX-BioB-M_at 1056.4 P 0.000044
AFFX-BioB-3_at 740 P 0.00011
AFFX-BioC-5_at 1915.7 P 0.000044
AFFX-BioC-3_at 2350.9 P 0.000044
AFFX-BioDn-5_at 5128.7 P 0.000044
AFFX-BioDn-3_at 8041.5 P 0.000044
AFFX-CreX-5_at 24852.8 P 0.000052
AFFX-CreX-3_at 30956.1 P 0.000044
AFFX-DapX-5_at 1040.5 P 0.000081
AFFX-DapX-M_at 1838.9 P 0.000662
AFFX-DapX-3_at 2634.4 P 0.000052
AFFX-LysX-5_at 146.3 P 0.004998
AFFX-LysX-M_at 268.6 P 0.010317
AFFX-LysX-3_at 440.4 P 0.000044
AFFX-PheX-5_at 244 P 0.000225
AFFX-PheX-M_at 229.1 P 0.000971
AFFX-PheX-3_at 325.6 P 0.00011
AFFX-ThrX-5_at 266 P 0.000754
AFFX-ThrX-M_at 370.2 P 0.000297

Total number of rows: 54675

Table truncated, full table size 1447 Kbytes.




Supplementary file Size Download File type/resource
GSM38083.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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