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Status
Public on Dec 31, 2004
Title
baseline control 05
Sample type
RNA
Source name
basolateral amygdala
Organism
Rattus norvegicus Characteristics
male, 275-300g
Extracted molecule
total RNA
Label
fluorscent label via ENZO BioArray RNA Transcript Labeling Kit
Description
Fear conditioning in rats leads to long term memory (LTM) formation. A central substrate for this type of LTM is the basolateral amygdala. We sought the expression changes specific to LTM at 6h following pain (a component of conditioning), following anesthesia with isoflurane (a general anesthetic and an effective amnestic agent), and following conditioning during isoflurane. For this also see GSE1779.
Data processing
raw data from Affymetrix
Submission date
Sep 17, 2004
Last update date
Mar 10, 2006
Contact name
Ira Rampil
E-mail(s)
ira.rampil@sunysb.edu Phone
631 444-2975
Organization name
University at Stony Brook
Lab
Rampil
Street address
City
Stony Brook
State/province
NY
ZIP/Postal code
11794-8480
Country
USA
Platform ID
GPL341 Series (1)
GSE1779 Effect of Isoflurane and LTM on basolateral amygdala
Data table header descriptions ID_REF
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-TrpnX-M_at
3.9
A
0.976071
AFFX-TrpnX-5_at
5.8
A
0.804734
AFFX-TrpnX-3_at
14.6
A
0.300606
AFFX-ThrX-M_at
35
A
0.39692
AFFX-ThrX-5_at
6.5
A
0.834139
AFFX-ThrX-3_at
10.6
A
0.834139
AFFX-r2-P1-cre-5_at
11457.4
P
0.000244
AFFX-r2-P1-cre-3_at
14500.8
P
0.000244
AFFX-r2-Ec-bioD-5_at
1857.1
P
0.000244
AFFX-r2-Ec-bioD-3_at
2487.1
P
0.000244
AFFX-r2-Ec-bioC-5_at
554.6
P
0.000244
AFFX-r2-Ec-bioC-3_at
739.3
P
0.000244
AFFX-r2-Ec-bioB-M_at
293.3
P
0.000244
AFFX-r2-Ec-bioB-5_at
163.2
P
0.00415
AFFX-r2-Ec-bioB-3_at
201.1
P
0.000244
AFFX-r2-Bs-thr-M_s_at
82.8
A
0.334473
AFFX-r2-Bs-thr-5_s_at
18.4
A
0.334473
AFFX-r2-Bs-thr-3_s_at
29.4
A
0.633789
AFFX-r2-Bs-phe-M_at
8
A
0.567627
AFFX-r2-Bs-phe-5_at
3.4
A
0.72583
15923 429 Kbytes .Supplementary data files not provided
