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Status |
Public on Dec 06, 2002 |
Title |
M7TW01010696 |
Sample type |
RNA |
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Source name |
tongue epidermis
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Organism |
Mus musculus |
Extracted molecule |
total RNA |
Extraction protocol |
as per manufacturer's instructions
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Label protocol |
as per manufacturer's instructions
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Hybridization protocol |
as per manufacturer's instructions
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Scan protocol |
as per manufacturer's instructions
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Description |
Large-scale analysis of the mouse transcriptome. Tongue epidermis, dorsal tongue surface C57BL/6L, M/F pool (4 males, 3 females), 8-11 weeks Analyzed using the Affymetrix MAS4 algorithm. Background: Avg: 287.46 Stdv: 13.90 Min: 265.79 Max: 309.31
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Submission date |
Nov 22, 2002 |
Last update date |
Dec 14, 2006 |
Contact name |
John R Walker |
E-mail(s) |
jwalker@gnf.org
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Phone |
858-812-1636
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Organization name |
Genomics Institute of the Novartis Research Foundation
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Lab |
Genetics Core
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Street address |
10675 John Jay Hopkins
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City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92121 |
Country |
USA |
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Platform ID |
GPL32 |
Series (1) |
GSE97 |
Large-scale analysis of the mouse transcriptome |
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Data table header descriptions |
ID_REF |
Affymetrix Probe Set Identifier |
Positive |
Number of positive probe pairs |
Negative |
Number of negative probe pairs |
Pairs |
Number of probe set specific probe pairs on the array |
Pairs_Used |
Pairs used |
Pairs_InAvg |
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Pos_Fraction |
Positive/Pairs_Used |
Log_Avg |
Log average |
PM_Excess |
Number of probe pairs where PM/MM exceeds the ratio limit (10 by default) |
MM_Excess |
Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default) |
Pos/Neg |
Positive/Negative |
VALUE |
Average Difference Intensity |
ABS_CALL |
Whether a probe set is present, marginal, or absent |
Data table |
ID_REF |
Positive |
Negative |
Pairs |
Pairs_Used |
Pairs_InAvg |
Pos_Fraction |
Log_Avg |
PM_Excess |
MM_Excess |
Pos/Neg |
VALUE |
ABS_CALL |
100001_at |
8 |
2 |
16 |
16 |
14 |
0.50 |
1.62 |
0 |
0 |
4.00 |
59.33 |
P |
100002_at |
6 |
4 |
16 |
16 |
15 |
0.38 |
0.28 |
0 |
0 |
1.50 |
-29.61 |
A |
100003_at |
10 |
2 |
16 |
16 |
15 |
0.62 |
1.99 |
0 |
0 |
5.00 |
219.70 |
P |
100004_at |
5 |
4 |
16 |
16 |
16 |
0.31 |
0.30 |
0 |
0 |
1.25 |
146.65 |
A |
100005_at |
8 |
0 |
16 |
16 |
15 |
0.50 |
1.43 |
0 |
0 |
Undef |
378.19 |
P |
100006_at |
6 |
2 |
16 |
16 |
13 |
0.38 |
0.82 |
0 |
0 |
3.00 |
33.00 |
A |
100007_at |
4 |
0 |
16 |
16 |
15 |
0.25 |
1.11 |
0 |
0 |
Undef |
426.58 |
A |
100009_r_at |
16 |
0 |
16 |
16 |
16 |
1.00 |
8.02 |
0 |
0 |
Undef |
1103.85 |
P |
100010_at |
4 |
0 |
16 |
16 |
15 |
0.25 |
0.92 |
0 |
0 |
Undef |
255.23 |
A |
100011_at |
13 |
0 |
16 |
16 |
15 |
0.81 |
4.74 |
0 |
0 |
Undef |
800.16 |
P |
100012_at |
9 |
0 |
16 |
16 |
16 |
0.56 |
1.87 |
0 |
0 |
Undef |
743.82 |
P |
100013_at |
7 |
2 |
16 |
16 |
15 |
0.44 |
0.45 |
0 |
0 |
3.50 |
24.38 |
A |
100014_at |
6 |
2 |
16 |
16 |
14 |
0.38 |
0.87 |
0 |
0 |
3.00 |
40.82 |
A |
100015_at |
7 |
3 |
16 |
16 |
15 |
0.44 |
0.45 |
0 |
0 |
2.33 |
458.72 |
A |
100016_at |
6 |
4 |
16 |
16 |
14 |
0.38 |
0.47 |
0 |
0 |
1.50 |
602.43 |
A |
100017_at |
12 |
2 |
16 |
16 |
15 |
0.75 |
2.66 |
0 |
0 |
6.00 |
494.14 |
P |
100018_at |
4 |
3 |
16 |
16 |
15 |
0.25 |
0.14 |
0 |
0 |
1.33 |
40.17 |
A |
100019_at |
6 |
2 |
16 |
16 |
16 |
0.38 |
0.87 |
0 |
0 |
3.00 |
-153.38 |
A |
100020_at |
8 |
3 |
16 |
16 |
15 |
0.50 |
1.82 |
0 |
0 |
2.67 |
335.28 |
A |
100021_at |
5 |
4 |
16 |
16 |
15 |
0.31 |
0.46 |
0 |
0 |
1.25 |
157.47 |
A |
Total number of rows: 10043
Table truncated, full table size 502 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM2980.CEL.gz |
3.1 Mb |
(ftp)(http) |
CEL |
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