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|
Status |
Public on Dec 06, 2002 |
Title |
M7TW00122062 |
Sample type |
RNA |
|
|
Source name |
epidermis
|
Organism |
Mus musculus |
Extracted molecule |
total RNA |
Extraction protocol |
as per manufacturer's instructions
|
Label protocol |
as per manufacturer's instructions
|
|
|
Hybridization protocol |
as per manufacturer's instructions
|
Scan protocol |
as per manufacturer's instructions
|
Description |
Large-scale analysis of the mouse transcriptome. Epidermis, dorsal skin without fur C57BL/6L, M/F pool (4 males, 3 females), 8-11 weeks Analyzed using the Affymetrix MAS4 algorithm. Background: Avg: 362.52 Stdv: 21.48 Min: 334.00 Max: 406.09
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|
|
Submission date |
Nov 22, 2002 |
Last update date |
Dec 14, 2006 |
Contact name |
John R Walker |
E-mail(s) |
jwalker@gnf.org
|
Phone |
858-812-1636
|
Organization name |
Genomics Institute of the Novartis Research Foundation
|
Lab |
Genetics Core
|
Street address |
10675 John Jay Hopkins
|
City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92121 |
Country |
USA |
|
|
Platform ID |
GPL32 |
Series (1) |
GSE97 |
Large-scale analysis of the mouse transcriptome |
|
Data table header descriptions |
ID_REF |
Affymetrix Probe Set Identifier |
Positive |
Number of positive probe pairs |
Negative |
Number of negative probe pairs |
Pairs |
Number of probe set specific probe pairs on the array |
Pairs_Used |
Pairs used |
Pairs_InAvg |
|
Pos_Fraction |
Positive/Pairs_Used |
Log_Avg |
Log average |
PM_Excess |
Number of probe pairs where PM/MM exceeds the ratio limit (10 by default) |
MM_Excess |
Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default) |
Pos/Neg |
Positive/Negative |
VALUE |
Average Difference Intensity |
ABS_CALL |
Whether a probe set is present, marginal, or absent |
Data table |
ID_REF |
Positive |
Negative |
Pairs |
Pairs_Used |
Pairs_InAvg |
Pos_Fraction |
Log_Avg |
PM_Excess |
MM_Excess |
Pos/Neg |
VALUE |
ABS_CALL |
100001_at |
5 |
2 |
16 |
16 |
14 |
0.31 |
0.62 |
0 |
0 |
2.50 |
-71.15 |
A |
100002_at |
5 |
3 |
16 |
16 |
16 |
0.31 |
0.41 |
0 |
0 |
1.67 |
49.41 |
A |
100003_at |
12 |
0 |
16 |
16 |
16 |
0.75 |
3.41 |
0 |
0 |
Undef |
1635.71 |
P |
100004_at |
4 |
3 |
16 |
16 |
16 |
0.25 |
0.18 |
0 |
0 |
1.33 |
150.93 |
A |
100005_at |
6 |
1 |
16 |
16 |
16 |
0.38 |
1.26 |
0 |
0 |
6.00 |
707.12 |
P |
100006_at |
5 |
3 |
16 |
16 |
14 |
0.31 |
0.35 |
0 |
0 |
1.67 |
208.33 |
A |
100007_at |
6 |
1 |
16 |
16 |
16 |
0.38 |
1.09 |
0 |
0 |
6.00 |
852.71 |
P |
100009_r_at |
6 |
1 |
16 |
16 |
16 |
0.38 |
2.13 |
0 |
0 |
6.00 |
54.31 |
P |
100010_at |
3 |
0 |
16 |
16 |
15 |
0.19 |
0.34 |
0 |
0 |
Undef |
155.29 |
A |
100011_at |
12 |
1 |
16 |
16 |
15 |
0.75 |
2.85 |
0 |
0 |
12.00 |
998.41 |
P |
100012_at |
6 |
3 |
16 |
16 |
16 |
0.38 |
1.00 |
0 |
0 |
2.00 |
395.24 |
A |
100013_at |
4 |
2 |
16 |
16 |
14 |
0.25 |
-0.11 |
0 |
0 |
2.00 |
-38.72 |
A |
100014_at |
3 |
1 |
16 |
16 |
14 |
0.19 |
0.56 |
0 |
0 |
3.00 |
32.70 |
A |
100015_at |
5 |
2 |
16 |
16 |
16 |
0.31 |
0.44 |
0 |
0 |
2.50 |
670.88 |
A |
100016_at |
3 |
1 |
16 |
16 |
14 |
0.19 |
0.20 |
0 |
0 |
3.00 |
621.69 |
A |
100017_at |
10 |
2 |
16 |
16 |
15 |
0.62 |
3.18 |
0 |
0 |
5.00 |
880.27 |
P |
100018_at |
4 |
3 |
16 |
16 |
14 |
0.25 |
-0.16 |
0 |
0 |
1.33 |
-426.11 |
A |
100019_at |
4 |
3 |
16 |
16 |
15 |
0.25 |
0.27 |
0 |
0 |
1.33 |
-111.02 |
A |
100020_at |
6 |
3 |
16 |
16 |
15 |
0.38 |
1.09 |
0 |
0 |
2.00 |
212.96 |
A |
100021_at |
6 |
4 |
16 |
16 |
15 |
0.38 |
0.77 |
0 |
0 |
1.50 |
89.76 |
A |
Total number of rows: 10043
Table truncated, full table size 502 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM2965.CEL.gz |
3.1 Mb |
(ftp)(http) |
CEL |
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