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Sample GSM2899 Query DataSets for GSM2899
Status Public on Dec 06, 2002
Title H9RGV99031201
Sample type RNA
 
Source name HepG2
Organism Homo sapiens
Extracted molecule total RNA
 
Description Large-scale analysis of the human transcriptome.
HepG2 cell line
Source: ATCC, HB-8065
Analyzed using the Affymetrix MAS4 algorithm.
Background: Avg: 86.08 Stdv: 3.36 Min: 79.57 Max: 92.19
 
Submission date Nov 22, 2002
Last update date Mar 16, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL8300
Series (1)
GSE96 Large-scale analysis of the human transcriptome

Data table header descriptions
ID_REF Affymetrix Probe Set Identifier
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_InAvg
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_InAvg Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
1000_at 8 2 16 16 15 0.50 3.27 0 0 4.00 345.00 P
1001_at 5 4 16 16 15 0.31 0.68 0 0 1.25 26.64 A
1002_f_at 5 2 16 16 14 0.31 0.09 0 0 2.50 58.14 A
1003_s_at 7 5 16 16 14 0.44 0.47 0 0 1.40 4.78 A
1004_at 6 3 16 16 15 0.38 0.38 0 0 2.00 4.21 A
1005_at 8 3 16 16 14 0.50 1.23 0 0 2.67 -17.57 A
1006_at 3 6 16 16 15 0.19 -1.34 0 0 0.50 -44.36 A
1007_s_at 9 1 16 16 14 0.56 2.67 0 0 9.00 240.71 P
1008_f_at 10 0 16 16 16 0.62 3.58 0 0 Undef 1051.30 P
1009_at 14 0 16 16 15 0.88 5.27 1 0 Undef 2989.94 P
100_g_at 7 2 16 16 15 0.44 1.38 0 0 3.50 191.14 P
1010_at 3 8 16 16 15 0.19 -1.32 0 0 0.38 -53.21 A
1011_s_at 14 0 16 16 15 0.88 4.51 0 0 Undef 345.48 P
1012_at 4 5 16 16 14 0.25 -0.11 0 0 0.80 3.05 A
1013_at 13 0 16 16 16 0.81 5.91 0 0 Undef 241.49 P
1014_at 7 1 16 16 15 0.44 1.95 0 0 7.00 73.74 P
1015_s_at 4 5 16 16 14 0.25 0.00 0 0 0.80 -21.10 A
1016_s_at 3 3 16 16 15 0.19 0.03 0 0 1.00 -2.72 A
1017_at 7 1 16 16 15 0.44 2.94 0 0 7.00 45.88 P
1018_at 2 3 16 16 15 0.12 -0.43 0 0 0.67 -26.46 A

Total number of rows: 12625

Table truncated, full table size 624 Kbytes.




Supplementary file Size Download File type/resource
GSM2899.CEL.gz 2.9 Mb (ftp)(http) CEL

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