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GEO accession:
Sample GSM2806
Query DataSets for GSM2806
Status
Public on Nov 21, 2002
Title
Mnk_3213-S-3
Sample type
RNA
Source name
PBMC from Rhesus Macaque
Organism
Macaca mulatta
Extracted molecule
total RNA
Description
Animal #3213
Slow progression group
Three weeks post -infection with SIV MAC251
Submission date
Nov 21, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE512
Peripheral Blood Mononuclear Cells of Rhesus Macaques Infected with SIVmac251
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs In Avg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs In Avg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
18
1
20
0.9
51234.1
P
AFFX-BioB-M_at
19
0
19
0.95
71560.3
P
AFFX-BioB-3_at
19
0
19
0.95
59121.5
P
AFFX-BioC-5_at
20
0
19
1
127930.7
P
AFFX-BioC-3_at
19
0
20
0.95
137490.5
P
AFFX-BioDn-5_at
20
0
19
1
66616.2
P
AFFX-BioDn-3_at
18
0
20
0.9
250381.2
P
AFFX-CreX-5_at
20
0
20
1
897762.5
P
AFFX-CreX-3_at
20
0
20
1
1167617.5
P
AFFX-BioB-5_st
5
2
19
0.25
4273
A
AFFX-BioB-M_st
3
5
17
0.15
-1026.6
A
AFFX-BioB-3_st
6
7
20
0.3
-1379.7
A
AFFX-BioC-5_st
3
5
17
0.15
681.5
A
AFFX-BioC-3_st
5
4
19
0.25
-351.9
A
AFFX-BioDn-5_st
7
4
19
0.35
5745.3
A
AFFX-BioDn-3_st
7
0
19
0.35
3953.3
P
AFFX-CreX-5_st
8
2
18
0.4
4909.1
P
AFFX-CreX-3_st
9
3
18
0.45
3619.8
P
hum_alu_at
69
0
69
1
1749936
P
AFFX-DapX-5_at
2
4
18
0.1
-961.4
A
Total number of rows:
7129
Table truncated, full table size
219 Kbytes
.
Supplementary data files not provided
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