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Status
Public on Nov 05, 2004
Title
INS-1
Sample type
RNA
Source name
INS-1 cell line (parental)
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
Starting with the rat insulinoma cell line INS-1, clones were generated that contain a FRT site for site specific integration of specific genes. In addition, the clones contain the tetracycline repressor allowing tetracycline (tet) induction of the introduced gene. By comparing the gene expression profiles of uninduced and tet-induced cells, target genes of introduced transcription factor can be identified. This entry corresponds to the RNA isolated from the parental INS-1 cell line.
Submission date
Jul 22, 2004
Last update date
May 27, 2005
Contact name
Ludger Klein-Hitpass
E-mail(s)
ludger.klein-hitpass@uni-essen.de Phone
+49 201 723 85552
Organization name
Institut fuer Zellbiologie
Department
Universitaetsklinikum
Lab
BioChip Lab
Street address
Virchowstr. 173
City
Essen
ZIP/Postal code
D-45122
Country
Germany
Platform ID
GPL341 Series (2)
GSE1591 INS-1 cell lines (FLP-In T-REx)
GSE6428 HNF1b, HNF4a2 and HNF6 targets
Data table header descriptions ID_REF
VALUE ‘signal’, a measure of the abundance of the transcript
ABS_CALL the call in an absolute analysis that indicates whether a transcript is reliably detected (Present, P) or not detected (Absent, A)
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
318.4
P
0.009337
AFFX-BioB-M_at
354.4
P
0.000662
AFFX-BioB-3_at
151.4
M
0.058444
AFFX-BioC-5_at
623
P
0.00011
AFFX-BioC-3_at
368.4
P
0.000044
AFFX-BioDn-5_at
775.6
P
0.001248
AFFX-BioDn-3_at
3926.3
P
0.000581
AFFX-CreX-5_at
6202.2
P
0.000044
AFFX-CreX-3_at
11653.2
P
0.000044
AFFX-DapX-5_at
223.9
P
0.000258
AFFX-DapX-M_at
517
P
0.003212
AFFX-DapX-3_at
436.2
P
0.00039
AFFX-LysX-5_at
3986.1
P
0.000044
AFFX-LysX-M_at
5518.6
P
0.000044
AFFX-LysX-3_at
9092
P
0.000044
AFFX-PheX-5_at
7378.8
P
0.000044
AFFX-PheX-M_at
9032.3
P
0.000044
AFFX-PheX-3_at
10465.4
P
0.000044
AFFX-ThrX-5_at
1440.4
P
0.000052
AFFX-ThrX-M_at
1826.1
P
0.000044
15923 432 Kbytes .Supplementary data files not provided
