GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM2623
Query DataSets for GSM2623
Status
Public on Nov 13, 2002
Title
D3_TP-48_C
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Donor 3 Time point 48 hours
Autologous control (uninfected)
Submission date
Nov 13, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE511
Proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs InAvg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs InAvg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
17
1
20
0.85
11665.7
P
AFFX-BioB-M_at
17
0
20
0.85
14165.6
P
AFFX-BioB-3_at
16
2
17
0.8
17392
P
AFFX-BioC-5_at
18
0
19
0.9
31958.4
P
AFFX-BioC-3_at
18
0
20
0.9
36251.6
P
AFFX-BioDn-5_at
17
0
19
0.85
17465.3
P
AFFX-BioDn-3_at
18
0
19
0.9
69053.8
P
AFFX-CreX-5_at
19
0
20
0.95
188443.1
P
AFFX-CreX-3_at
18
0
20
0.9
188871.4
P
AFFX-BioB-5_st
6
5
18
0.3
850.5
A
AFFX-BioB-M_st
4
4
17
0.2
801.1
A
AFFX-BioB-3_st
4
7
19
0.2
-1426.6
A
AFFX-BioC-5_st
6
6
18
0.3
-1784
A
AFFX-BioC-3_st
6
2
19
0.3
744.8
A
AFFX-BioDn-5_st
8
6
19
0.4
2681.5
A
AFFX-BioDn-3_st
9
3
19
0.45
1639.6
M
AFFX-CreX-5_st
8
3
19
0.4
1767.5
A
AFFX-CreX-3_st
3
3
18
0.15
-1401.9
A
hum_alu_at
58
0
69
0.84
194335.3
P
AFFX-DapX-5_at
6
6
18
0.3
791.8
A
Total number of rows:
7129
Table truncated, full table size
220 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
