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GEO accession:
Sample GSM2617
Query DataSets for GSM2617
Status
Public on Nov 13, 2002
Title
D3_TP-0_C
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Donor 3 Time point 0
Autologous control (uninfected)
Submission date
Nov 13, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE511
Proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs InAvg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs InAvg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
15
2
20
0.75
26051
P
AFFX-BioB-M_at
18
0
19
0.9
30930
P
AFFX-BioB-3_at
17
2
17
0.85
45951
P
AFFX-BioC-5_at
19
0
19
0.95
78764
P
AFFX-BioC-3_at
19
0
20
0.95
90082
P
AFFX-BioDn-5_at
19
0
20
0.95
40996
P
AFFX-BioDn-3_at
19
0
18
0.95
147626
P
AFFX-CreX-5_at
19
0
20
0.95
345900
P
AFFX-CreX-3_at
16
0
20
0.8
326217
P
AFFX-BioB-5_st
8
4
18
0.4
5001
A
AFFX-BioB-M_st
5
0
18
0.25
930
A
AFFX-BioB-3_st
4
3
19
0.2
48
A
AFFX-BioC-5_st
3
6
18
0.15
-2979
A
AFFX-BioC-3_st
5
1
18
0.25
1783
A
AFFX-BioDn-5_st
9
7
19
0.45
5019
A
AFFX-BioDn-3_st
6
1
19
0.3
1431
A
AFFX-CreX-5_st
8
4
19
0.4
4334
A
AFFX-CreX-3_st
5
4
18
0.25
-5368
A
hum_alu_at
56
0
69
0.81
339295
P
AFFX-DapX-5_at
10
5
18
0.5
4407
A
Total number of rows:
7129
Table truncated, full table size
208 Kbytes
.
Supplementary data files not provided
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