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GEO accession:
Sample GSM2609
Query DataSets for GSM2609
Status
Public on Nov 13, 2002
Title
D2_TP-12_C
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Donor 2 Time point 12 hours
Autologous control (uninfected)
Submission date
Nov 13, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE511
Proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs InAvg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs InAvg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
14
1
20
0.7
13208
P
AFFX-BioB-M_at
16
0
20
0.8
16250
P
AFFX-BioB-3_at
15
2
18
0.75
17389
P
AFFX-BioC-5_at
16
0
19
0.8
36123
P
AFFX-BioC-3_at
19
0
20
0.95
45011
P
AFFX-BioDn-5_at
17
0
20
0.85
21746
P
AFFX-BioDn-3_at
18
0
19
0.9
95561
P
AFFX-CreX-5_at
20
0
20
1
309510
P
AFFX-CreX-3_at
19
0
20
0.95
323849
P
AFFX-BioB-5_st
7
5
18
0.35
254
A
AFFX-BioB-M_st
4
1
18
0.2
-484
A
AFFX-BioB-3_st
2
5
19
0.1
-2001
A
AFFX-BioC-5_st
3
7
17
0.15
-1666
A
AFFX-BioC-3_st
9
1
19
0.45
2402
M
AFFX-BioDn-5_st
8
6
19
0.4
2229
A
AFFX-BioDn-3_st
7
2
19
0.35
1588
A
AFFX-CreX-5_st
9
3
19
0.45
2159
A
AFFX-CreX-3_st
4
4
18
0.2
738
A
hum_alu_at
59
0
69
0.86
328601
P
AFFX-DapX-5_at
6
3
18
0.3
1978
A
Total number of rows:
7129
Table truncated, full table size
207 Kbytes
.
Supplementary data files not provided
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