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GEO accession:
Sample GSM2608
Query DataSets for GSM2608
Status
Public on Nov 13, 2002
Title
D2_TP-0_I
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Donor 2 Time point 0
Infected with HIV-1, RF
Lot batch = 11839152
Submission date
Nov 13, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE511
Proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number fo negative probe pairs
Pairs InAvg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs InAvg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
10
3
18
0.5
5322
P
AFFX-BioB-M_at
10
1
19
0.5
5656
P
AFFX-BioB-3_at
10
3
17
0.5
-435
M
AFFX-BioC-5_at
15
0
19
0.75
15436
P
AFFX-BioC-3_at
14
0
19
0.7
19593
P
AFFX-BioDn-5_at
14
0
19
0.7
7137
P
AFFX-BioDn-3_at
15
2
18
0.75
37117
P
AFFX-CreX-5_at
19
0
20
0.95
140487
P
AFFX-CreX-3_at
18
0
20
0.9
163548
P
AFFX-BioB-5_st
6
4
18
0.3
4045
A
AFFX-BioB-M_st
4
4
18
0.2
419
A
AFFX-BioB-3_st
3
6
18
0.15
-1483
A
AFFX-BioC-5_st
2
6
17
0.1
-3305
A
AFFX-BioC-3_st
5
3
20
0.25
2467
A
AFFX-BioDn-5_st
6
4
19
0.3
2553
A
AFFX-BioDn-3_st
3
2
19
0.15
1009
A
AFFX-CreX-5_st
5
4
19
0.25
522
A
AFFX-CreX-3_st
5
4
18
0.25
-2079
A
hum_alu_at
40
0
69
0.58
135106
P
AFFX-DapX-5_at
8
3
18
0.4
1708
A
Total number of rows:
7129
Table truncated, full table size
208 Kbytes
.
Supplementary data files not provided
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