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GEO accession:
Sample GSM2604
Query DataSets for GSM2604
Status
Public on Nov 13, 2002
Title
D1_TP-48_I
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Donor 1 Time point 48 hours
post infection with HIV-1, RF
Submission date
Nov 13, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE511
Proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs InAvg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs InAvg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
12
2
19
0.6
10281
P
AFFX-BioB-M_at
18
0
19
0.9
16198
P
AFFX-BioB-3_at
18
0
19
0.9
16297
P
AFFX-BioC-5_at
19
0
19
0.95
44670
P
AFFX-BioC-3_at
20
0
20
1
50970
P
AFFX-BioDn-5_at
18
0
20
0.9
23183
P
AFFX-BioDn-3_at
18
0
19
0.9
81753
P
AFFX-CreX-5_at
20
0
20
1
193269
P
AFFX-CreX-3_at
18
0
20
0.9
195052
P
AFFX-BioB-5_st
4
5
19
0.2
-367
A
AFFX-BioB-M_st
6
3
18
0.3
655
A
AFFX-BioB-3_st
6
7
19
0.3
-1657
A
AFFX-BioC-5_st
4
4
18
0.2
-1628
A
AFFX-BioC-3_st
5
5
20
0.25
4
A
AFFX-BioDn-5_st
7
5
19
0.35
3257
A
AFFX-BioDn-3_st
9
1
19
0.45
2754
P
AFFX-CreX-5_st
9
4
20
0.45
2864
A
AFFX-CreX-3_st
7
6
18
0.35
637
A
hum_alu_at
50
0
69
0.72
230071
P
AFFX-DapX-5_at
3
8
18
0.15
-682
A
Total number of rows:
7129
Table truncated, full table size
206 Kbytes
.
Supplementary data files not provided
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