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GEO accession:
Sample GSM2597
Query DataSets for GSM2597
Status
Public on Nov 13, 2002
Title
D1_TP-12_C
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Donor 1 time point 12 hours
Autologous Control (uninfected)
Submission date
Nov 13, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE511
Proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs InAvg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs InAvg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
12
1
19
0.6
15127
P
AFFX-BioB-M_at
18
0
19
0.9
18560
P
AFFX-BioB-3_at
15
0
19
0.75
14293
P
AFFX-BioC-5_at
18
0
19
0.9
46251
P
AFFX-BioC-3_at
20
0
20
1
54474
P
AFFX-BioDn-5_at
19
0
19
0.95
27428
P
AFFX-BioDn-3_at
17
1
19
0.85
122464
P
AFFX-CreX-5_at
19
0
20
0.95
310388
P
AFFX-CreX-3_at
18
0
20
0.9
307362
P
AFFX-BioB-5_st
8
5
18
0.4
2776
A
AFFX-BioB-M_st
6
5
17
0.3
578
A
AFFX-BioB-3_st
5
9
20
0.25
-2701
A
AFFX-BioC-5_st
4
6
17
0.2
-1934
A
AFFX-BioC-3_st
3
5
17
0.15
-643
A
AFFX-BioDn-5_st
7
2
19
0.35
5347
A
AFFX-BioDn-3_st
7
2
19
0.35
2719
A
AFFX-CreX-5_st
8
4
19
0.4
2386
A
AFFX-CreX-3_st
10
6
17
0.5
940
A
hum_alu_at
53
0
69
0.77
274026
P
AFFX-DapX-5_at
5
6
19
0.25
-361
A
Total number of rows:
7129
Table truncated, full table size
206 Kbytes
.
Supplementary data files not provided
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