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GEO accession:
Sample GSM2591
Query DataSets for GSM2591
Status
Public on Nov 13, 2002
Title
D1_TP-0_C
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Donor 1 time point 0
autologous control (uninfected)
Submission date
Nov 13, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE511
Proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs InAvg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs InAvg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
17
3
20
0.85
15561
P
AFFX-BioB-M_at
18
0
18
0.9
20436
P
AFFX-BioB-3_at
18
0
19
0.9
24098
P
AFFX-BioC-5_at
19
0
19
0.95
63286
P
AFFX-BioC-3_at
20
0
20
1
77121
P
AFFX-BioDn-5_at
20
0
20
1
35871
P
AFFX-BioDn-3_at
18
0
19
0.9
129452
P
AFFX-CreX-5_at
20
0
20
1
329359
P
AFFX-CreX-3_at
19
0
20
0.95
372023
P
AFFX-BioB-5_st
6
4
19
0.3
432
A
AFFX-BioB-M_st
7
1
18
0.35
2751
P
AFFX-BioB-3_st
6
7
19
0.3
-574
A
AFFX-BioC-5_st
5
6
18
0.25
-1299
A
AFFX-BioC-3_st
4
3
17
0.2
168
A
AFFX-BioDn-5_st
8
4
18
0.4
2314
A
AFFX-BioDn-3_st
7
1
19
0.35
3554
P
AFFX-CreX-5_st
10
3
20
0.5
3756
P
AFFX-CreX-3_st
7
4
18
0.35
718
A
hum_alu_at
56
0
69
0.81
318354
P
AFFX-DapX-5_at
3
8
18
0.15
-1438
A
Total number of rows:
7129
Table truncated, full table size
206 Kbytes
.
Supplementary data files not provided
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