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Sample GSM252732 Query DataSets for GSM252732
Status Public on Dec 04, 2008
Title Mutant hypothyroid MH_6
Sample type RNA
 
Source name Mutant hypothyroid
Organism Mus musculus
Characteristics Mouse liver total RNA; mixed strain background (B6;129S); NCoRloxP/loxP-AlbuminCre;
mice were put on a low iodine diet supplemented with 0.15% PTU (LoI/PTU-Harlan Teklad TD.95125) for 3 weeks.
Extracted molecule total RNA
Extraction protocol Total RNA from was isolated using Trizol as described above and further purified with RNeasy Mini kit per manufacturer’s instructions (Qiagen, Valencia, CA). 200 ng total RNA was then used for GeneChip analysis. Preparation of terminal-labeled cDNA, hybridization to genome-wide murine Gene Level 1.0 ST GeneChips (Affymetrix, Santa Clara, CA, USA) and scanning of the arrays were carried out according to manufacturer’s protocols (https://www.affymetrix.com).
Label Biotin
Label protocol WT labeling kit (www.affymetrix.com)
 
Hybridization protocol affymetrix
Scan protocol affymetrix
Description affymetrix
Data processing RMA signal intensity calculation
 
Submission date Dec 21, 2007
Last update date Dec 03, 2008
Contact name Martin Bilban
E-mail(s) Martin.Bilban@meduniwien.ac.at
Phone ++43 (0)1 40400 6441
Organization name Medical University of Vienna
Department
Street address
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platform ID GPL6246
Series (1)
GSE10001 Gene expression profiling in NCoR deficient mouse livers

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2)

Data table
ID_REF VALUE
10338001 11.32039
10338002 6.428268
10338003 9.869169
10338004 8.716176
10338005 1.583767
10338006 1.756486
10338007 2.047473
10338008 3.094549
10338009 8.767853
10338010 1.60386
10338011 5.504189
10338012 1.668527
10338013 1.477705
10338014 1.49111
10338015 1.481902
10338016 7.833958
10338017 12.4882
10338018 6.868
10338019 4.901979
10338020 8.72808

Total number of rows: 35557

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM252732.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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