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GEO accession:
Sample GSM22332
Query DataSets for GSM22332
Status
Public on Oct 12, 2004
Title
Rat EOM- R3GL2.1
Sample type
RNA
Source name
Adult rat extraocular muscle global layer microdissected using laser
Organism
Rattus norvegicus
Extracted molecule
total RNA
Description
T7 based amplification of mRNA using RiboAmp OA RNA Amplification kit followed by the affymetrix standard protocol and run on ratRAE230A array set.
http://www.med.upenn.edu/cellbio/faculty/rubinstein/
http://www.uphs.upenn.edu/pmi/members/khurana/lab%20page.htm
Keywords = Extraocular muscle
Keywords = Global layer
Keywords = Orbital layer
Keywords = Microarray
Keywords = Laser Capture microscopy
Submission date
May 06, 2004
Last update date
May 27, 2005
Contact name
Murat T Budak
E-mail(s)
mtbudak@mail.med.upenn.edu
Phone
215-8989726
Organization name
University of Pennsylvania
Department
Lab
Rubinstein and Khurana Labs
Street address
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL341
Series (1)
GSE1374
Laminar gene expression of rat extraocular orbital and global layers
Data table header descriptions
ID_REF
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
Detection p-value
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
Detection p-value
AFFX-BioB-5_at
206.2
P
0.006187
AFFX-BioB-M_at
363.6
P
0.000052
AFFX-BioB-3_at
190.2
P
0.00011
AFFX-BioC-5_at
748.7
P
0.000052
AFFX-BioC-3_at
491
P
0.000044
AFFX-BioDn-5_at
534.7
P
0.000258
AFFX-BioDn-3_at
2590.8
P
0.00006
AFFX-CreX-5_at
8132.9
P
0.000044
AFFX-CreX-3_at
9575
P
0.000044
AFFX-DapX-5_at
18.9
A
0.52976
AFFX-DapX-M_at
23.5
A
0.354453
AFFX-DapX-3_at
2.1
A
0.981719
AFFX-LysX-5_at
2.1
A
0.960339
AFFX-LysX-M_at
4.4
A
0.824672
AFFX-LysX-3_at
11.5
A
0.250796
AFFX-PheX-5_at
1.5
A
0.949771
AFFX-PheX-M_at
1.6
A
0.883887
AFFX-PheX-3_at
2.8
A
0.987453
AFFX-ThrX-5_at
3.9
A
0.949771
AFFX-ThrX-M_at
7.5
A
0.60308
Total number of rows:
15923
Table truncated, full table size
420 Kbytes
.
Supplementary data files not provided
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