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GEO accession:
Sample GSM22330
Query DataSets for GSM22330
Status
Public on Oct 12, 2004
Title
Rat EOM- R2OL2.1
Sample type
RNA
Source name
Adult rat extraocular muscle orbital layer microdissected using laser
Organism
Rattus norvegicus
Extracted molecule
total RNA
Description
T7 based amplification of mRNA using RiboAmp OA RNA Amplification kit followed by the affymetrix standard protocol and run on ratRAE230A array set.
http://www.med.upenn.edu/cellbio/faculty/rubinstein/
http://www.uphs.upenn.edu/pmi/members/khurana/lab%20page.htm
Keywords = Extraocular muscle
Keywords = Global layer
Keywords = Orbital layer
Keywords = Microarray
Keywords = Laser Capture microscopy
Submission date
May 06, 2004
Last update date
May 27, 2005
Contact name
Murat T Budak
E-mail(s)
mtbudak@mail.med.upenn.edu
Phone
215-8989726
Organization name
University of Pennsylvania
Department
Lab
Rubinstein and Khurana Labs
Street address
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL341
Series (1)
GSE1374
Laminar gene expression of rat extraocular orbital and global layers
Data table header descriptions
ID_REF
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
Detection p-value
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
Detection p-value
AFFX-BioB-5_at
188.9
P
0.001248
AFFX-BioB-M_at
349.3
P
0.00006
AFFX-BioB-3_at
148.3
P
0.000052
AFFX-BioC-5_at
450.3
P
0.00006
AFFX-BioC-3_at
382.3
P
0.000044
AFFX-BioDn-5_at
473.7
P
0.000662
AFFX-BioDn-3_at
2108
P
0.00006
AFFX-CreX-5_at
5699.4
P
0.000044
AFFX-CreX-3_at
5345.9
P
0.000044
AFFX-DapX-5_at
11.8
M
0.062929
AFFX-DapX-M_at
6.5
A
0.165861
AFFX-DapX-3_at
2.4
A
0.937071
AFFX-LysX-5_at
0.3
A
0.852061
AFFX-LysX-M_at
2.3
A
0.724854
AFFX-LysX-3_at
4.4
A
0.659339
AFFX-PheX-5_at
1.2
A
0.941556
AFFX-PheX-M_at
0.4
A
0.897835
AFFX-PheX-3_at
8.7
A
0.60308
AFFX-ThrX-5_at
1.1
A
0.969024
AFFX-ThrX-M_at
3.3
A
0.724854
Total number of rows:
15923
Table truncated, full table size
420 Kbytes
.
Supplementary data files not provided
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