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GEO accession:
Sample GSM22329
Query DataSets for GSM22329
Status
Public on Oct 12, 2004
Title
Rat EOM- R2OL1
Sample type
RNA
Source name
Adult rat extraocular muscle orbital layer microdissected using laser
Organism
Rattus norvegicus
Extracted molecule
total RNA
Description
T7 based amplification of mRNA using RiboAmp OA RNA Amplification kit followed by the affymetrix standard protocol and run on ratRAE230A array set.
http://www.med.upenn.edu/cellbio/faculty/rubinstein/
http://www.uphs.upenn.edu/pmi/members/khurana/lab%20page.htm
Keywords = Extraocular muscle
Keywords = Global layer
Keywords = Orbital layer
Keywords = Microarray
Keywords = Laser Capture microscopy
Submission date
May 06, 2004
Last update date
May 27, 2005
Contact name
Murat T Budak
E-mail(s)
mtbudak@mail.med.upenn.edu
Phone
215-8989726
Organization name
University of Pennsylvania
Department
Lab
Rubinstein and Khurana Labs
Street address
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL341
Series (1)
GSE1374
Laminar gene expression of rat extraocular orbital and global layers
Data table header descriptions
ID_REF
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
Detection p-value
'detection p-value', p-value that indicates the significance level of the detection cal
Data table
ID_REF
VALUE
ABS_CALL
Detection p-value
AFFX-BioB-5_at
217.8
P
0.000581
AFFX-BioB-M_at
378.4
P
0.000044
AFFX-BioB-3_at
195.3
P
0.000044
AFFX-BioC-5_at
653.8
P
0.00006
AFFX-BioC-3_at
425.6
P
0.000052
AFFX-BioDn-5_at
560.4
P
0.000225
AFFX-BioDn-3_at
2401.4
P
0.000052
AFFX-CreX-5_at
6887.1
P
0.000044
AFFX-CreX-3_at
6319.1
P
0.000044
AFFX-DapX-5_at
1
A
0.783476
AFFX-DapX-M_at
6
A
0.5
AFFX-DapX-3_at
0.9
A
0.969024
AFFX-LysX-5_at
0.4
A
0.978098
AFFX-LysX-M_at
1.5
A
0.737191
AFFX-LysX-3_at
3.9
A
0.470241
AFFX-PheX-5_at
2
A
0.860518
AFFX-PheX-M_at
0.9
A
0.937071
AFFX-PheX-3_at
12.3
A
0.455413
AFFX-ThrX-5_at
1
A
0.966323
AFFX-ThrX-M_at
2.4
A
0.760937
Total number of rows:
15923
Table truncated, full table size
420 Kbytes
.
Supplementary data files not provided
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