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Sample GSM159287 Query DataSets for GSM159287
Status Public on Apr 15, 2007
Title Drosophila_bam86_rep3
Sample type RNA
 
Source name Drosophila ovaries, bam mutant
Organism Drosophila melanogaster
Characteristics Genotype: bam[delta86] mutant
Aged 3-5 days
Biomaterial provider McKearin lab
Treatment protocol None
Growth protocol Standard cornmeal molasses + dry yeast
Extracted molecule total RNA
Extraction protocol Total RNA extracted with TRIzol reagent
Label Biotin
Label protocol Standard labeling protocol
 
Hybridization protocol Full protocol at: http://microarray.swmed.edu/AffyHybProtocol.htm
Scan protocol Standard Affymetrix scanning protocol
Description Drosophila ovaries, bam mutant
Data processing Affymetrix GCOS
GeneSpring
 
Submission date Jan 29, 2007
Last update date Aug 28, 2018
Contact name Dennis McKearin
Phone 214-648-4944
Organization name UT Southwestern Med. Ctr.
Department Molecular Biology
Street address 6000 Harry Hines Blvd., NA5.214
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platform ID GPL1322
Series (1)
GSE6928 Stonewalling Drosophila stem cell differentiation by epigenetic controls
Relations
Reanalyzed by GSE119084

Data table header descriptions
ID_REF
Stat Pairs Number of oligo pairs per chip
Stat Pairs Used Number of pairs detected
VALUE Signal intensity
ABS_CALL Call flags (present/absent)
DETECTION P-VALUE Statistical P-value

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 202.3 P 0.000081
AFFX-BioB-M_at 20 20 332.6 P 0.000081
AFFX-BioB-3_at 20 20 177.8 P 0.000446
AFFX-BioC-5_at 20 20 546.8 P 0.000297
AFFX-BioC-3_at 20 20 495.2 P 0.000044
AFFX-BioDn-5_at 20 20 1151 P 0.000044
AFFX-BioDn-3_at 20 20 3699.1 P 0.00006
AFFX-CreX-5_at 20 20 7325.1 P 0.000052
AFFX-CreX-3_at 20 20 10377.3 P 0.000044
AFFX-DapX-5_at 20 20 3.7 A 0.354453
AFFX-DapX-M_at 20 20 17.4 A 0.116092
AFFX-DapX-3_at 20 20 2 A 0.860518
AFFX-LysX-5_at 20 20 6.7 A 0.52976
AFFX-LysX-M_at 20 20 1.8 A 0.860518
AFFX-LysX-3_at 20 20 1.6 A 0.588635
AFFX-PheX-5_at 20 20 2.6 A 0.574038
AFFX-PheX-M_at 20 20 1.1 A 0.973889
AFFX-PheX-3_at 20 20 6.2 A 0.470241
AFFX-ThrX-5_at 20 20 3.2 A 0.659339
AFFX-ThrX-M_at 20 20 1.1 A 0.772364

Total number of rows: 18952

Table truncated, full table size 617 Kbytes.




Supplementary file Size Download File type/resource
GSM159287.CEL.gz 3.2 Mb (ftp)(http) CEL

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