GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM15419

Query DataSets for GSM15419

Status

Public on Jan 30, 2004

Title

APL_Erythro1

Sample type

RNA

Source name

primary APL cells treated with erythro-9-(2-hydroxy-3-nonyl) adenine HCl

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Sample from a leukopharesis of a patient with acute promyelocytic leukemia (APL) with a t(15;17) and a white blood cell count of 185,000 with 97% myeloblasts at diagnosis treated with 70 uM erythro-9-(2-hydroxy-3-nonyl) adenine HCl for 5 days. Target preparation and hybridization as described in Stegmaier et al., Nature Genetics 2004.
Keywords = APL Leukemia

Submission date

Jan 16, 2004

Last update date

May 28, 2005

Contact name

Ken Ross

E-mail(s)

kross@broadinstitute.org

Phone

617-714-7473

Fax

617-714-8955

URL

http://www.broad.mit.edu/cancer/

Organization name

Broad Institute

Department

Cancer Genomics

Lab

Golub Lab

Street address

7 Cambridge Center

City

Cambridge

State/province

ZIP/Postal code

02142

Country

USA

Platform ID

GPL96

Series (2)

GSE976	Gene Expression-Based High Throughput Screening: APL Treatment with Candidate Compounds
GSE995	Differentiation of acute myeloid leukemia cells

Data table header descriptions
ID_REF
VALUE	Affymetrix GeneChip MAS5 Signal
ABS_CALL	Affymetrix GeneChip MAS5 A,M, or P Call

Data table
ID_REF	VALUE	ABS_CALL
AFFX-BioB-5_at	1.7	A
AFFX-BioB-M_at	1.1	A
AFFX-BioB-3_at	0.7	A
AFFX-BioC-5_at	10.9	A
AFFX-BioC-3_at	4.7	A
AFFX-BioDn-5_at	1.1	A
AFFX-BioDn-3_at	27.7	A
AFFX-CreX-5_at	1.1	A
AFFX-CreX-3_at	2.7	A
AFFX-DapX-5_at	3.2	A
AFFX-DapX-M_at	0.4	A
AFFX-DapX-3_at	2.2	A
AFFX-LysX-5_at	0.7	A
AFFX-LysX-M_at	1.5	A
AFFX-LysX-3_at	1.5	A
AFFX-PheX-5_at	1.2	A
AFFX-PheX-M_at	1.1	A
AFFX-PheX-3_at	2.7	A
AFFX-ThrX-5_at	0.8	A
AFFX-ThrX-M_at	2.4	A

Total number of rows: 22283

Table truncated, full table size 388 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM15419.CEL.gz	3.3 Mb	(ftp)(http)	CEL
Processed data included within Sample table