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Status
Public on Mar 16, 2004
Title
germ cells on STO day 1 GPL341
Sample type
RNA
Source name
germ cells from 22 day old rat testis, cultured for 1 day
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 0.510).
Submission date
Nov 10, 2003
Last update date
May 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
schultz@cbio.mskcc.org Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL341 Series (1)
Data table header descriptions ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
148.9
P
0.003212
AFFX-BioB-M_at
236.6
P
0.000044
AFFX-BioB-3_at
103.5
P
0.000095
AFFX-BioC-5_at
381.7
P
0.000044
AFFX-BioC-3_at
188.1
P
0.000044
AFFX-BioDn-5_at
287.3
P
0.000169
AFFX-BioDn-3_at
1074.3
P
0.000081
AFFX-CreX-5_at
2995.2
P
0.000044
AFFX-CreX-3_at
3216.8
P
0.000044
AFFX-DapX-5_at
9.5
A
0.239063
AFFX-DapX-M_at
16.3
A
0.340661
AFFX-DapX-3_at
1.9
A
0.966323
AFFX-LysX-5_at
18.2
A
0.095667
AFFX-LysX-M_at
19.5
A
0.455413
AFFX-LysX-3_at
2.3
A
0.5
AFFX-PheX-5_at
2.4
A
0.868639
AFFX-PheX-M_at
1.4
A
0.971543
AFFX-PheX-3_at
27
A
0.147939
AFFX-ThrX-5_at
3
A
0.724854
AFFX-ThrX-M_at
8.5
A
0.368438
15923 423 Kbytes .Supplementary file Size Download File type/resource GSM12795.CEL.gz
2.6 Mb
(ftp) (http) CEL
