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GEO accession:
Sample GSM12300
Query DataSets for GSM12300
Status
Public on Nov 25, 2003
Title
N3 Renal Clear Cell Carcinoma U133A
Sample type
RNA
Source name
Trizol isolation of total RNA from normal tissue adjacent to Renal Cell Carcinoma
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Age = 50; Gender = Male; Left Kidney; Adjacent Tumor Type = clear cell; Adjacent Tumor Fuhrman Grade = 2; Adjacent Tumor Capsule Penetration = false; Adjacent Tumor Perinephric Fat Invasion = false; Adjacent Tumor Renal Sinus Invasion = true; Adjacent Tumor Renal Vein Invasion = false; Adjacent Tumor Location: mid; Scaling Target = 500; Scaling Factor = 4.76; Raw Q = 3.01; Noise = 3.72; Background = 72.11.
Keywords = kidney
Keywords = renal
Keywords = RCC
Keywords = carcinoma
Keywords = cancer
Lot batch = 2004076
Submission date
Oct 23, 2003
Last update date
May 28, 2005
Contact name
Marc E. Lenburg
E-mail(s)
mlenburg@bu.edu
Phone
617-414-1375
Fax
617-414-1646
URL
http://gg.bu.edu
Organization name
Boston University School of Medicine
Department
Genetics and Genomics
Street address
715 Albany Street, E613B
City
Boston
State/province
MA
ZIP/Postal code
02130
Country
USA
Platform ID
GPL96
Series (1)
GSE781
Normal and Renal Cell Carcinoma Kidney Tissue, Human
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Statistical Algorithm (mean scaled to 500)
ABS_CALL
MAS 5.0 Absent, Marginal, Present call with Alpha1 = 0.05, Alpha2 = 0.065
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
626.9
P
AFFX-BioB-M_at
1234.7
P
AFFX-BioB-3_at
660.5
P
AFFX-BioC-5_at
1437.1
P
AFFX-BioC-3_at
1011.8
P
AFFX-BioDn-5_at
1620.4
P
AFFX-BioDn-3_at
9488.5
P
AFFX-CreX-5_at
14155.8
P
AFFX-CreX-3_at
20734.3
P
AFFX-DapX-5_at
37.1
A
AFFX-DapX-M_at
32.9
A
AFFX-DapX-3_at
12.3
A
AFFX-LysX-5_at
35.3
A
AFFX-LysX-M_at
59.1
A
AFFX-LysX-3_at
24.1
A
AFFX-PheX-5_at
4.7
A
AFFX-PheX-M_at
9.2
A
AFFX-PheX-3_at
21.9
A
AFFX-ThrX-5_at
26.2
A
AFFX-ThrX-M_at
13.3
A
Total number of rows:
22283
Table truncated, full table size
402 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM12300.CEL.gz
3.4 Mb
(ftp)
(http)
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