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Sample GSM11036 Query DataSets for GSM11036
Status Public on Oct 09, 2003
Title CVB3_S-5h
Sample type RNA
 
Source name HeLa cell lysate
Organism Homo sapiens
Extracted molecule total RNA
 
Description Human cervical carcinoma cells (HeLa cells; American-Type Culture
Collection) were cultured in a 10 cm tissue culture plate. Cells were serum starved overnight and infected with phosphate buffered saline for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 5 hours following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed and hybridized to Affymetrix U95A arrays.
 
Submission date Oct 08, 2003
Last update date Mar 16, 2009
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL8300
Series (1)
GSE712 CVB3-infected HeLa cells (multiple time points)

Data table header descriptions
ID_REF
VALUE Raw signal intensity values from Affymetrix MAS 5.0
ABS_CALL Present/Absent/Marginal call as determined in MAS 5.0
DETECTION-p-VALUE p-value that indicates the detection confidence as calculated by the MAS 5.0 software

Data table
ID_REF VALUE ABS_CALL DETECTION-p-VALUE
31307_at 11.4 A 0.933135
31308_at 22.3 A 0.67917
31309_r_at 11.5 A 0.918663
31310_at 13 A 0.980696
31311_at 23.2 A 0.993468
31312_at 107.4 A 0.781017
31313_at 100.5 A 0.438361
31314_at 33.6 A 0.824011
31315_at 364.6 A 0.284747
31316_at 18.3 A 0.918663
31317_r_at 712.9 A 0.07383
31318_at 14.2 A 0.97214
31319_at 118 A 0.795978
31320_at 830.9 A 0.267463
31321_at 193.2 A 0.175989
31322_at 76.2 A 0.697453
31323_r_at 173.7 A 0.901946
31324_at 195.5 A 0.32083
31325_at 35.7 A 0.975289
31326_at 89.7 A 0.810313

Total number of rows: 12558

Table truncated, full table size 316 Kbytes.




Supplementary data files not provided

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